Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0914 ATGAAAAATCTAACTGTCACTACGAATGATTCCTTGTCCAGCTTACTCGAACATGCTTCTAAGAATGATTTTGAACAATTTAAGATAGCTTTAGACAGTGATGCGTCGCTGTTACTTGAAGTCGGGGCCTGGTGTGTCCGTCAAAATGGACATAACCAAATTGTTCTTGAGGACAGAACCGCTTTGATGGTGGCAGCATCCTGTGGGAGTATTGATATTTTAAAGCTTATACTTTCATGTTCCGAGGCTGGTGTAAATTTTACTTGCGGGACTGATAAAACCACTGCTCTTCATTGTGCTGCTTCAAGTGGTACGGTTAATGCTGTTGATGCTGTAAAATTGCTTTTATCAGCTGGCGCTGACATCTATTGTGTCGATGCTAATGGGAACCGTCCAATGGATGTTATTGTTCTTCCTATTGTTGTTCCCCATAAGCTCGAAGTCGTGAAAAGAAGTCTTGAACAACTTCTCTCAAATAGTGCTGCTGATGAGTCTGTTGATGATGGTTCGCTTCCGCTGTCATCTTTTGAAAAGGGGTCTCCATCCTCTCCCGTGGCTCCAAAGTTGACCGACACAGCTGTTAGTTCTACACCAGAAAAGAAAAAATATCCAATTGATCCATCAATTCCTGATATAAGAAACAGCATATATGCCACAGATGAATTTCGCATGTATTCGGTCAAGGTCCTTCTTTGTCATCGTGCATACACTCATAATTGGACCGAGTGTCCTTTTTACCATCCTAATGAGAATGCACGAAGGAGAGACCCTAGAAAGTTCACCTACAGCTGTGTGCCATGCGCTGATTTTAAAACTAGGGATTGCAAACGTGGTGATATGTGTGAATATGCTCATGGAGTATTCGAGACCTGGCTACATCCAGATCAGTATCGCACAAGGCTCTGCAAAGAGGGTACTAATTGTAACCGAAAGGTGTGCTTTTTTGCACATGTTGCTGAAGAGCTGCGTCCATCGCATGCTTCCATTAGATCAGCTGCATCTGCTCCTATTGTCATGGACATGGCTGCTTCAACGAGCCTTTATCGTGGTTCGCTATCAGCAATCTCTTCGATGTATCCACCACCTTTTGCACAGCCTTTGTCTCCATATGCTAATGGCCTCTTTGATGGTCAGCAGCACATGCTAAATGACTTGAGCTGTTTCTCACAGCCCTGTCCGGGTACCATTTCATTGGGTCGGTCTGTTAACTCCTGGTCTAAGTGGGGATCCCGTACTGGAAAACCTGATTGGTCCGTTAACGGAAATGACTTTGGTCGTTCGCTGAGATATACCACTTTTGAGCATGGAAACAATGTTGAAGAGCCTGATATATCTTGGGTCCAATCTCTTGTCAACTAA 1359 0.4378 MKNLTVTTNDSLSSLLEHASKNDFEQFKIALDSDASLLLEVGAWCVRQNGHNQIVLEDRTALMVAASCGSIDILKLILSCSEAGVNFTCGTDKTTALHCAASSGTVNAVDAVKLLLSAGADIYCVDANGNRPMDVIVLPIVVPHKLEVVKRSLEQLLSNSAADESVDDGSLPLSSFEKGSPSSPVAPKLTDTAVSSTPEKKKYPIDPSIPDIRNSIYATDEFRMYSVKVLLCHRAYTHNWTECPFYHPNENARRRDPRKFTYSCVPCADFKTRDCKRGDMCEYAHGVFETWLHPDQYRTRLCKEGTNCNRKVCFFAHVAEELRPSHASIRSAASAPIVMDMAASTSLYRGSLSAISSMYPPPFAQPLSPYANGLFDGQQHMLNDLSCFSQPCPGTISLGRSVNSWSKWGSRTGKPDWSVNGNDFGRSLRYTTFEHGNNVEEPDISWVQSLVN* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0914 452 Gene3D - 263 324 - -
Mtr3g0914 452 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 398 452 - -
Mtr3g0914 452 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 374 - -
Mtr3g0914 452 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Mtr3g0914 452 ProSiteProfiles Ankyrin repeat region circular profile. 92 122 - -
Mtr3g0914 452 SMART ANK_2a 92 124 IPR002110 GO:0005515
Mtr3g0914 452 SMART ANK_2a 57 87 IPR002110 GO:0005515
Mtr3g0914 452 Pfam Ankyrin repeats (3 copies) 49 124 IPR002110 GO:0005515
Mtr3g0914 452 MobiDBLite consensus disorder prediction 164 201 - -
Mtr3g0914 452 Gene3D - 2 175 IPR036770 -
Mtr3g0914 452 SUPERFAMILY Ankyrin repeat 10 167 IPR036770 -
Mtr3g0914 452 MobiDBLite consensus disorder prediction 175 197 - -
Mtr3g0914 452 SMART c3hfinal6 296 319 IPR000571 GO:0046872
Mtr3g0914 452 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Mtr3g0914 452 PANTHER UNKEMPT FAMILY MEMBER 398 452 IPR045234 -
Mtr3g0914 452 PANTHER UNKEMPT FAMILY MEMBER 1 374 IPR045234 -
Mtr3g0914 452 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0914 Mtr-Chr3 13509332 13510693 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0914 11 373 C2H2 Transcription Factor Family AT5G12850 51.414 3.31e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr3g0914 Ank_2 7.9e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0914 - - mtr:MTR_3g435590 931.784