Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0912 ATGGAGAATATTGATCCACTCACAGTTTTGAAATATGATCATCATGCAATACAAGATTATGATGATCCATTGCAACCTTCATTCCAATTTTCTACTTATGATAATAATCATAATTATAATTATAATCTTTACAAATTCAATGATTGGTCACATTATGGATTTCCCATGCAAGATACAAATTTTGATCCTTTCATGGAAAATTATTATCCTGATTTTCGAAATGAAACTCTTCCACCTGAATTACTTGTACCACCACCATTAAGCGTAGAAGACTATGGTTATGGTGATGCTAAAAATGTAGTTCCAATGTGGAATGAACTTGATGCTGGATTTTATTCAGATAAACATATCTTTTCTATTAGCAACATTATTGGAGAAAATGTTGCAAAGGAAATTGTGAAGGGTAAGAGATGTAGAGAAGAGAATAGTGCTAGAATGTTAACTAAAGAGACAATTTCTGAGTATTTCTACATGCCAATATCACAAGCTGCTAGAGAACTTAATGTTGGGCTTACACATTTGAAGAAAAGGTGTAGGGATCTTGGAATTCAAAGGTGGCCACATAGGAAATTAATGAGTCTTCAAACCCTAATAAAGAATGTACAAGAGCAAGGTAATGAATATGATGAAAAAATAAGAAATGCTGTGGAAGTATTGCAGAAAGAAATGAAGAAGGTAGAGGAAAAGCCAGATTTGCAACTTGCAGAAAACACAAAAAGGCTTAGACAAGCTTGTTTCAAAGCTAATTACAAGAAGAGAAGACTCATGGTTATGAGGTTAATGGATCAGTCTTCTATCAGTGAAAGTTCAAATGTTGATGATAATCACAAAATGGGTTATTAA 843 0.3274 MENIDPLTVLKYDHHAIQDYDDPLQPSFQFSTYDNNHNYNYNLYKFNDWSHYGFPMQDTNFDPFMENYYPDFRNETLPPELLVPPPLSVEDYGYGDAKNVVPMWNELDAGFYSDKHIFSISNIIGENVAKEIVKGKRCREENSARMLTKETISEYFYMPISQAARELNVGLTHLKKRCRDLGIQRWPHRKLMSLQTLIKNVQEQGNEYDEKIRNAVEVLQKEMKKVEEKPDLQLAENTKRLRQACFKANYKKRRLMVMRLMDQSSISESSNVDDNHKMGY* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0912 280 Pfam RWP-RK domain 147 194 IPR003035 -
Mtr3g0912 280 ProSiteProfiles RWP-RK domain profile. 130 215 IPR003035 -
Mtr3g0912 280 Coils Coil 209 229 - -
Mtr3g0912 280 PANTHER PROTEIN RKD4 129 273 IPR044607 GO:0003700
Mtr3g0912 280 PANTHER PROTEIN RKD1-RELATED 129 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0912 Mtr-Chr3 13494376 13496214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0912 136 254 AtRKD Transcription Factor Family AT1G18790 63.281 3.45e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mtr3g0912 RWP-RK 7.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0912 - - mtr:MTR_3g435550 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0912 3 13494376 13496214 Mtr3g0912 3 13494376 13496214 ECH
Mtr4g3929 4 53048682 53049747 Mtr3g0912 3 13494376 13496214 PCT