Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0904 ATGGCTCTTTTGGTGCTTTTCTTTGTTGGATTACTCTATTTAGCATCAAGTGTCTTTGCATCCAATGATGGTTGGATTAATGCTCATGCTACCTTCTATGGAGGAGGTGATGCCTCTGGCACAATGGGTGGAGCATGTGGATATGGGAACTTGTATAGCCAAGGGTATGGGACTAACACAGCTGCTTTAAGCACTGCTCTATTCAACAGTGGATTAAGCTGTGGAGCATGTTTTGAGATAAAATGTGTTAATGACCAAAAGTGGTGTCTTCCAAAATCAATTGTGGTCACTGCAACAAATTTTTGTCCTCCAAACAATGCACTTCCAAATAATGCAGGTGGTTGGTGTAACCCTCCTCTTCATCATTTTGATCTCTCTCAACCTGTTTTTCAACAAATTGCTCAATACAAAGCTGGAATTGTACCTGTTGCTTATAAAAGGGTCCCTTGCCAAAAGAAAGGAGGCATTAGATTCACAATCAATGGTCATTCATACTTCAACCTTGTACTAATTACCAACGTTGGAGGAGCTGGTGATGTTACAGCAGTTTCCATTAAAGGTTCAAAAACTAATTGGCAACCAATGTCTAGAAATTGGGGCCAAAATTGGCAAAGCAACTCTAACCTTGATGGACAAAGTCTCTCCTTCAAAGTCACTTCTAGCGACGGTCGCACCGTCATAGCTAATAATGTTGTACCTGCCGGATGGTCCTTTGGTCAAACCTTCACCGGCCTTCAATTCTGA 744 0.4167 MALLVLFFVGLLYLASSVFASNDGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGACFEIKCVNDQKWCLPKSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQQIAQYKAGIVPVAYKRVPCQKKGGIRFTINGHSYFNLVLITNVGGAGDVTAVSIKGSKTNWQPMSRNWGQNWQSNSNLDGQSLSFKVTSSDGRTVIANNVVPAGWSFGQTFTGLQF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0904 247 Gene3D - 13 151 IPR036908 -
Mtr3g0904 247 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Mtr3g0904 247 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Mtr3g0904 247 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Mtr3g0904 247 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Mtr3g0904 247 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Mtr3g0904 247 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Mtr3g0904 247 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Mtr3g0904 247 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Mtr3g0904 247 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Mtr3g0904 247 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Mtr3g0904 247 PANTHER EXPANSIN-A15 7 247 IPR002963 GO:0009664
Mtr3g0904 247 SMART dpbb_1 60 145 IPR007112 -
Mtr3g0904 247 Pfam Lytic transglycolase 60 145 IPR009009 -
Mtr3g0904 247 Gene3D - 153 247 IPR036749 -
Mtr3g0904 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Mtr3g0904 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Mtr3g0904 247 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Mtr3g0904 247 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Mtr3g0904 247 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Mtr3g0904 247 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Mtr3g0904 247 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Mtr3g0904 247 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Mtr3g0904 247 PANTHER EXPANSIN 7 247 - -
Mtr3g0904 247 SUPERFAMILY Barwin-like endoglucanases 24 173 IPR036908 -
Mtr3g0904 247 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0904 Mtr-Chr3 13383144 13386008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0904 1 247 Expansin Gene Family AT2G03090 78.138 1.45e-148 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0904 - K20628 egr:104419919 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g0190 7 3100727 3103197 Mtr3g0904 3 13383144 13386008 ECH
Mtr6g0307 6 3752836 3755328 Mtr3g0904 3 13383144 13386008 ECH
Mtr3g0904 3 13383144 13386008 Mtr3g0904 3 13383144 13386008 ECH
Mtr5g1661 5 18224535 18226702 Mtr3g0904 3 13383144 13386008 ECH