Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0893 ATGGAAAATGTTTCAGTTTTGTGTAAGGAAAAGGATCAGATGGTTTTGCCTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTCATTAGTCATTACCTTTATAAAAAGGTAATTGACATAAACTTCTCTGCTAGGGCCATTGGAGAAGTGGATTTGAACAAATCTGAGCCTTGGGATTTGCCATGTAAAGCCAAAATGGGTGAAAAAGAGTGGTACTTTTTTTGTATGAGAGATAAAAAGTACCCAACTGGTTTGAGGACTAATAGAGCTACTGAAGCTGGATATTGGAAGGCAACAGGAAAAGATAAGGAGATTTACAGAGGAAAATATCTTGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAGAAAAGTAATTGGGTAATGCATGAATATAGACTTGAGGGTAAATTCTCTGTTTACAACCTCCCTAAAACTGCCAAGAATGAGTGGGTGATTTGCAGGGTATTTAAGAAGAGTTTATCAGGCAAAAAGACATGTCATTCTGGGATAATGAGGTTAGAATCTTTAGGAAATGAAATGAGTTCTTCTATTCTTCCACCACTCACAAATTCTTCACCTTATTCCATTGACAAAATCAAATCACCTTACGTGTCCTGCTTCTCCAATCCAATTGAAAGAAACCAAGTTGGAATCTTTGATTCCTTTAACAACACCCCTTTTGAAGTTCCTTCAAATCATTCAATTAATCTTCCAAAAAATACACCTTCTATTGGTTCATTTTACTCTACTCAAGGAATTCAAGTTCATCCCTCACCAAATTTGCCATTACATGGTTCTGTTTATAACAATGGATCAAACTTTGAGAATCAGCATCATCCACCTTCTTCAACTGCACCAATTGATCTATCTACCTTATGGAATTACTGA 912 0.364 MENVSVLCKEKDQMVLPPGFRFHPTDEELISHYLYKKVIDINFSARAIGEVDLNKSEPWDLPCKAKMGEKEWYFFCMRDKKYPTGLRTNRATEAGYWKATGKDKEIYRGKYLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVYNLPKTAKNEWVICRVFKKSLSGKKTCHSGIMRLESLGNEMSSSILPPLTNSSPYSIDKIKSPYVSCFSNPIERNQVGIFDSFNNTPFEVPSNHSINLPKNTPSIGSFYSTQGIQVHPSPNLPLHGSVYNNGSNFENQHHPPSSTAPIDLSTLWNY* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0893 303 MobiDBLite consensus disorder prediction 278 303 - -
Mtr3g0893 303 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Mtr3g0893 303 Gene3D NAC domain 25 169 IPR036093 GO:0003677|GO:0006355
Mtr3g0893 303 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Mtr3g0893 303 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 7 276 - -
Mtr3g0893 303 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Mtr3g0893 303 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0893 Mtr-Chr3 13257195 13259866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0893 14 303 NAC Transcription Factor Family AT5G07680 55.352 1.58e-114 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr3g0893 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0893 - - gmx:100170719 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3937 4 53132818 53134628 Mtr3g0893 3 13257195 13259866 ECH
Mtr3g0893 3 13257195 13259866 Mtr3g0893 3 13257195 13259866 ECH