Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0875 ATGGAGAGTGAAGGGTTTGATTTGAATAATGGTAAGAAGATTGGTGATGGTTTTGTTGATAGAAGTAAAGTGAGGATTTTGCTTTGTGATACTGATTCCAATACCTCTCAAGAGGTTTTTACACTTCTTTTGAGATGTTGTTATCAAGTTATTTCAGTGAAGTCGGCAAGACAAGTAATTGATGCACTGAATGCGGAGAAGGAAACTATAGATCTCATACTGGCTGAAGTTGGCCTTCCGAAGAAGAAGGGCATGAAGATGTTGAAGTACATAGCCCGAGACAAAGAATTGCGCAGAATTCCTATTATAATGATGTCTGCACAAGATGAGGTGTCTGTTGTTGTGAAGTGCTTGAGGCTCGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACAAATGAACTATTAAATTTGTGGACGCACATGTGGAGAAGGAGGCGCATGCTTGGACTTGCAGAGAAGAACATGTTAAATTATGACTTTGATCTGGTAGTATCAGAGCCTAGTGATAACAATACAAACAGTACCACCCTGTTCTCTGATGACACCGATGATAAGTCAAAGAGAAGCACTATTCAAGAGACAGGAATATCAGTCCAACAAGAGCAAGAGTCTACTATTGCAAATGCTGCTTCTGTTGAGGAACCTCGAGATGATCATGCATCAGAATGTCAGCCTGATGTCCATGGAATAGATGATCAGCAAACAGCTTCTTTTTCATCTGGTCCAAAGAAGAGCGAACTAAGGATTGGGGTTAGGGAGTCATCAGCTTTCTTCACATATGTTAAAGCATCAATGCTAAAGAGAAACCTTGAAGGGATTGTTCAAGCTGATAACAATGCTGTCGCATGTGTTAGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTTAGTGATCTTGAAGTATGCAAAAATGGAGAAACTTGTGATAGTCAATCACAAGATGACTTCCCCAGCAGCAATAGTATACCTGATTCTTTATCTATTGAGAGATCTGGTACTCCACCTGCATCTTTGGAAGCCTCACAGCAAAACCGTTACGAAGAAGAAAATTTGCATCACAGCAGTCTGATACATCCAGGAACTGGGACGCATTGTTCTGAGCTCGAAATGTCTAACATGCCTGCACAAAATTTGCATCACAACAGTCTGATGCATCCAAGAAATGGGGCTCATTGTCCTGAGCTTGAAAGATCTAACATGACTGCACAACCTGCTTATCCATATTATATGTCATCGGGAGTTAATCATGTTATGATGCCTTCATCGGCGCAAATGTATCAAAAGAATGTCTACGACCTGCAGCATCATGCTGGTACATCTATTATTGGTCACTACAATCATGTTCCACAAGTCGGTCCTCATACCACCGGCATGATGTCCTTCCCGTATTACCCAATGAATATGTGCTTACATCCAGGTCAGTCATGGCCATCCTACGGAGGTTCAAGTTCATCCGAAGCAAAGTTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATTAAATTCAGACAGAAAAAGAAAGAGCGCTGTTTTGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCTGAAAGACGGCCTCGTGTGAGAGGACAGTTTGTCAGTAAGTTGAATGGTGTTAATGTGGATCTTAATGGACAGCCTCCTTCCATTGAATATGATGAAAATGAAGAAGATGATCAGGGAGCTAGAGATTACTCTCCGAGGGATGCTTGA 1728 0.4138 MESEGFDLNNGKKIGDGFVDRSKVRILLCDTDSNTSQEVFTLLLRCCYQVISVKSARQVIDALNAEKETIDLILAEVGLPKKKGMKMLKYIARDKELRRIPIIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLNYDFDLVVSEPSDNNTNSTTLFSDDTDDKSKRSTIQETGISVQQEQESTIANAASVEEPRDDHASECQPDVHGIDDQQTASFSSGPKKSELRIGVRESSAFFTYVKASMLKRNLEGIVQADNNAVACVRMEVMHQACAQQGVSDLEVCKNGETCDSQSQDDFPSSNSIPDSLSIERSGTPPASLEASQQNRYEEENLHHSSLIHPGTGTHCSELEMSNMPAQNLHHNSLMHPRNGAHCPELERSNMTAQPAYPYYMSSGVNHVMMPSSAQMYQKNVYDLQHHAGTSIIGHYNHVPQVGPHTTGMMSFPYYPMNMCLHPGQSWPSYGGSSSSEAKLSKVDRREAALIKFRQKKKERCFDKKIRYVNRKQLAERRPRVRGQFVSKLNGVNVDLNGQPPSIEYDENEEDDQGARDYSPRDA* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0875 575 MobiDBLite consensus disorder prediction 192 210 - -
Mtr3g0875 575 MobiDBLite consensus disorder prediction 542 575 - -
Mtr3g0875 575 Gene3D - 24 238 - -
Mtr3g0875 575 Coils Coil 575 575 - -
Mtr3g0875 575 Pfam Response regulator receiver domain 26 137 IPR001789 GO:0000160
Mtr3g0875 575 MobiDBLite consensus disorder prediction 311 347 - -
Mtr3g0875 575 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 10 552 - -
Mtr3g0875 575 ProSiteProfiles CCT domain profile. 498 540 IPR010402 GO:0005515
Mtr3g0875 575 ProSiteProfiles Response regulatory domain profile. 25 143 IPR001789 GO:0000160
Mtr3g0875 575 SMART REC_2 24 139 IPR001789 GO:0000160
Mtr3g0875 575 MobiDBLite consensus disorder prediction 172 246 - -
Mtr3g0875 575 SUPERFAMILY CheY-like 20 149 IPR011006 -
Mtr3g0875 575 MobiDBLite consensus disorder prediction 213 227 - -
Mtr3g0875 575 MobiDBLite consensus disorder prediction 311 366 - -
Mtr3g0875 575 Pfam CCT motif 498 540 IPR010402 GO:0005515
Mtr3g0875 575 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 552 IPR045279 GO:0009736
Mtr3g0875 575 MobiDBLite consensus disorder prediction 229 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0875 Mtr-Chr3 12991616 12998231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0875 6 574 Response Regulator Gene Family AT5G61380 46.457 1.77e-162 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Mtr3g0875 Response_reg 3.7e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0875 K12127 - gmx:100799728 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0875 3 12991616 12998231 Mtr3g0875 3 12991616 12998231 ECH