Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0869 ATGGCCACTCAATCCCCTTCCGATTCTCTCGACGTCGACGACTACGTTTTGGATAATGGGCCAGAAGGATTGTCATGGGACACATTTCATTATGTTTACGAGCTTGTGCAAAAGGGAAATTTGGCCTTTCGAGACAACAGAATGGAAGAGGCAATCAACTTTTACTCAAGAGCCAATAACATCAAATCTAGTGATCCAATTATCCTCGGCAATCGAAGTGCAGCTTATATCAGGATTAGCCAATATTTAATGCATAGATCTTCATCATCCTCAGAACATAGGCCATTGAGTGGGCTTGATCCCACAACACTTGCCGAACTGGGTTTGAAGGATGCTGCAAAGCTTGTGGAACTCCAAAGCAGTTCAGTAAAACCATACCTTTTGAAGGCCAATGCTCTTCTTCTGTTAGAGAAATATGACGTGGCTCGGGATGTTATTCTTTCTGGACTTCAAGTTGATCCTTTTAGTAATTCCCTTCGGGAATGTCTTCAAAGAGTGGAAAGAGTATCATCTAGTTCAACAGGAAGGAGTACACATATACAACCAGAGCGGAATGATGACTTTGATTGCACTCTCTGCCTGAAATTACTGTATGAACCTGTCACAACCCCCTGTGGACATTCATTTTGCCGTTCATGTCTATTTCAGTCAATGGATCGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTGCTCATTAGCCCCAGAACATGTTCAATTAGTGTGACATTGAAGAGCATCATACAAAAGAACTTTTCAGAGGAATATGCTGAAAGGAAGCAAGAGAATGACAGTTTAGTCAACATTGGTGTAGATATGCTCCCTCTTTTTGTCATGGATGTTGTCTTACCCTGTCAAAGATTTCCACTAAATATATTTGAACCTCGTTATAGACTTATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATAATAGATGCTTCAACAGGATCATTAGCAGAGTTTGGCTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAGGTCGTAGGAGATTTCGCAACCTCCGTTCTTGGGATCAAGATGGATATCGTGTTGCAGAAGTTGAATGGATACAAGATATTATGCCGCCAGAAGGGACAAAAGAAAGAGAGGATTTACAGGAATTGACGCAGAATGCAGCAGAAAGTGCTCGAACATGGATAGGAAGAGCTAAAGAAGCAGCAAGACAAGATCAAAGAAGATTAGAGAAACTCGTGAATGTTGAAGGAATGATACCCTCATTAAGAGACCCCGAGCGCTTTAGTTTTTGGCTGGCTACCCTCTCGAATCGTAGGCCTTCAGAAAGATTGGATGTCCTACGCATTAGAGATACTACAGAGAGAATTAGACGAGGCCTGATATTTCTTCGAGCAGAGGAACAAGGATGCAGAATTCAGTAA 1443 0.4207 MATQSPSDSLDVDDYVLDNGPEGLSWDTFHYVYELVQKGNLAFRDNRMEEAINFYSRANNIKSSDPIILGNRSAAYIRISQYLMHRSSSSSEHRPLSGLDPTTLAELGLKDAAKLVELQSSSVKPYLLKANALLLLEKYDVARDVILSGLQVDPFSNSLRECLQRVERVSSSSTGRSTHIQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLLISPRTCSISVTLKSIIQKNFSEEYAERKQENDSLVNIGVDMLPLFVMDVVLPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMVIIDASTGSLAEFGCEVEITECEPLPDGRFYIEIEGRRRFRNLRSWDQDGYRVAEVEWIQDIMPPEGTKEREDLQELTQNAAESARTWIGRAKEAARQDQRRLEKLVNVEGMIPSLRDPERFSFWLATLSNRRPSERLDVLRIRDTTERIRRGLIFLRAEEQGCRIQ* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0869 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 269 IPR013083 -
Mtr3g0869 480 SUPERFAMILY TPR-like 31 163 IPR011990 GO:0005515
Mtr3g0869 480 SUPERFAMILY RING/U-box 184 251 - -
Mtr3g0869 480 Gene3D - 272 374 IPR046336 -
Mtr3g0869 480 ProSiteProfiles Zinc finger RING-type profile. 190 228 IPR001841 -
Mtr3g0869 480 Pfam Zinc finger, C3HC4 type (RING finger) 190 227 - -
Mtr3g0869 480 PANTHER RING FINGER PROTEIN 127 11 473 - -
Mtr3g0869 480 SMART lon_5 273 472 IPR003111 -
Mtr3g0869 480 SUPERFAMILY PUA domain-like 274 470 IPR015947 -
Mtr3g0869 480 ProSiteProfiles Lon N-terminal domain profile. 271 472 IPR003111 -
Mtr3g0869 480 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 11 473 - -
Mtr3g0869 480 Pfam ATP-dependent protease La (LON) substrate-binding domain 274 470 IPR003111 -
Mtr3g0869 480 SMART ring_2 190 227 IPR001841 -
Mtr3g0869 480 Gene3D Tetratricopeptide repeat domain 31 169 IPR011990 GO:0005515
Mtr3g0869 480 ProSitePatterns Zinc finger RING-type signature. 205 214 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0869 178 231 C3H Transcription Factor Family AT1G74990 35.088 2.05e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0869 - - gmx:100802277 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0869 3 12893389 12903660 Mtr3g0869 3 12893389 12903660 ECH