Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0842 ATGGCGATACATTTATACAAAACTTCTATCCCGAGCACCCGCACACGAAATCGTTTGATTTATGGACAGCATCATTGTGGTAAAGGCCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGTAATGAAAAAGACATATATGGTCGAATCGTAACTATCGAATACGACCCTAATAGAAATGCACACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTGTTTATGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCGGCTGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTAGGACAAGTAGGGAATGTTGGAGTAAACCAAAAAAGTTTGGGCAGAGCCGGAGCTAAACGTTGGTTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCACATGGTGGTGGTGAAGGGAGGGCCCCGATTGGTAGAAAAAAACCCTCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAAAAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG 792 0.423 MAIHLYKTSIPSTRTRNRLIYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAHICLIHYGDGEKRYILHPRGAIIGDTIVYGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRSRKKNKYSDNLILRRRSK* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0842 263 Pfam Ribosomal Proteins L2, RNA binding domain 29 104 IPR022666 GO:0003735|GO:0005840|GO:0006412
Mtr3g0842 263 Pfam Ribosomal Proteins L2, C-terminal domain 112 238 IPR022669 GO:0003735|GO:0005840|GO:0006412
Mtr3g0842 263 PANTHER 50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC 11 261 - -
Mtr3g0842 263 PANTHER RIBOSOMAL PROTEIN L2 11 261 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mtr3g0842 263 Gene3D - 105 183 IPR014722 -
Mtr3g0842 263 TIGRFAM rplB_bact: ribosomal protein uL2 15 262 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Mtr3g0842 263 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 4 263 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mtr3g0842 263 SMART Ribosomal_L2_2 29 105 IPR002171 GO:0003735|GO:0005840|GO:0006412
Mtr3g0842 263 Gene3D - 12 104 IPR012340 -
Mtr3g0842 263 Hamap 50S ribosomal protein L2 [rplB]. 1 262 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Mtr3g0842 263 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Mtr3g0842 263 MobiDBLite consensus disorder prediction 247 263 - -
Mtr3g0842 263 SMART Ribosomal_L2_C_2 111 240 IPR022669 GO:0003735|GO:0005840|GO:0006412
Mtr3g0842 263 SUPERFAMILY Translation proteins SH3-like domain 113 260 IPR008991 -
Mtr3g0842 263 Gene3D Ribosomal protein L2, domain 3 184 262 IPR014726 -
Mtr3g0842 263 ProSitePatterns Ribosomal protein L2 signature. 205 216 IPR022671 GO:0003735|GO:0005840|GO:0006412
Mtr3g0842 263 MobiDBLite consensus disorder prediction 214 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0842 Mtr-Chr3 12214162 12217222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0842 40 222 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 36.410 5.38e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0842 K02886 - jre:26380845 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0842 3 12214162 12217222 Mtr3g0842 3 12214162 12217222 ECH