Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0796 ATGGCGAATTCTCGCCCTTCTAAGCGCCACAAAATTAACAGGGGGGAGGATGATTATATGCCTGGAAACATTTTAGAGATCGAACTTCATAATTTCATGACATTTGATTACTTAAAATGTAAACCCGGGCCTCGGTTGAATCTCGTAATTGGGCCAAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGCCTCTGCGGAGAGCCCCAGTTGCTTGGGCGAGCCACAAGTATTCAGGCATTTGTGAAGCGGGGAGAAGATTCTGGGCACATTAAGATTACCTTGAGGGGGGACCATAAAGAGGAGCAAATTACAATTATGCGTAAAATAAACACTAGCAACAAGTCGGAATGGGTTTTAAATGGAAATATTGTGCCCAAAAAGGATGTGGCTGAAACCATTCAGAGGTTTAACATCCAAGTAAATAATTTGACTCAATTTTTACCGCAAGACAGGGTCTGTGAGTTTGCAAAGTTAACTCCTGTGCAACTTCTGGAAGAGACAGAAAAAGCTGTTGGTGATCCACAACTTCCAGAGCAACATCGTGCACTTATTGACAAAAGTCGTGCACTGAAGCATGTTGAGCTGTCTCTGGAGAAAAATGAAGGAACTTTAAACCAGTTGAAGGAACGTAATGCTGAGTTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGATGAACTTCTGGCCAAGGCCGAATCAATGAAAAAGAAATTGCCATGGCTGAGGTATGATATGAAGCAGGCTGAATATCGTGAAGCTAAGGAGCGTGAGAAGGCTGCAGCAAAGGAGCTTGAGAAGGTGGCAAAATTATTAAATGAACTTAAAGAACCTATTAAGAAACAAAAAGAGGAGAAAGCTGCATTAGATGCAAAATGCAAAAAGGCTAACAACCGAATAAGTGACAATGCCAAGAAGAGAATGGAACTTATGGAGAAAGAGAATCAATTGGAGGTGGAATTACAAGGGAAGTACAAAGAGATGGACGAGTTGAGGAAGCAGGAAGAAAATCGGCAACAGAAATTAAAACAAGCTAGGGAGGAACTTGCAGCTGCTGAACTTGAACTTGAGAATCTAAACCCTTATGAACCTCCCAAGGATGAGATTCATAGACTGAGAGAGGGAATTGTGGAGTTGGATTATTCTGCTAACCAAGCGAGACAGAATAAGTCACAAGCAGAAAGCGAAATAAAGCATAAAAAGTTCTCCTTAATTAAGTGTAAAGAGAGGTTGATGGAAATGAATAATAAAAGTACCAAGTGTTTGCATGCACTGCGGAAATCTGGGGTTGAAAGAATTTTCGATGCTTATAAATGGGTCCAAGAGCATCGCGATGAATTCCACAAGGAGGTTTATGGCCCAGTTTTAGTTGAGGTGAATGTCTCAGATCAATCTCATGCTGGATATCTAGAGGGTCAAGTTGCTTGGTACACTTGGAAGTCTTTCATAACACAGGATCCCCGCGATCGGGACTTCTTGGTGAACAACCTACGGAACTACGATGTACCAGTTTTAAATTATACTGGTCATGATAGCCGAAGAGAGCCGCCTCCTGAAATATCTGCCGATATGCGTGCTCTTGGTATCAACTCTCGTTTGGACCAAATTTTTGATGCTCCTGTTGCTGTCAAGGAGGTGTTGATTAGCCAATCTAATCTTGATCATTCGTTTATTGGATCGAAAGAAACTGATCAGAAAGCTGATGGGGTACCAAAATTGGGAATTACTAGCTTATGGACACCAGAAAATCACTATCACTGGTCTAAGTCTAGATATGGAAATCATGTCTCAGCAGTTGTTGAACAAGTGCAACGCCCTCAACTTCTACTGAATAATTTAAATGTGAGGGACATTGAGGATCTGAGCTCCGAGGAAAGGGAGCTTCATGAACATATTGCTTCCTTGGAGGAAAGTCTTAAAAAGTTTCAAGACGAGGAAAGAAGCTTTGTGAATCAGGCTGCTAATCTTCGTAAGCAGTTGGAGAACATTCGTTTAGAAGCACAAAATAAGCAAAAAGAGCGACAAGCAATTGTTAGGCGTACTGAACAAAAGAAAAGCAAACTGAAATCGATGGAGGAGCAAGATGATTTGGATACTGAGTTAGCAAAGCTTGTTGATCAGGCAACAAAGTGTAACATTCAACGATTACATAATGCAATTAAAATTAAGGATCTTCTTGTTGAAGCCGCGGGTTACAGACGAAGTTTTGCTGAACAACGCATGGCTTTCATTGAATTTGATGCAAAGATTGGAGAAGCGGAGGCCAGTCTGAAGCAGCATGAAAATATTGCTCTGCAGGCATCATCACACTTTAATAACTCTAAGAAAGAGGCTGAAGAATGTAGACAGAAGCTTACAGATTTATTAAACTATGCTAAGTCAATTGCCCGGCTTACACCCGACCTAGAGAAGGAGTTTCTTGAGATGCCTACTACAATTGAGGAGTTGGAAGCAGCTATCCAAGATACAACTTCTCAAGCCAATTCAATCCTTTTTGTCAATAATAACATATTGGAACAATATGAGGCTCGTCAGAGACAGATAGAAGATCTTGCAAAAAAACTTGATGCTGACAAGAAGGAATCTACAAGGTGTCTAGCTGAATTGGATAACATTAAGGGAAAATGGCTCCCTACATTGAGAAACCTCGTGGCCCAGATAAATGAAACTTTTAGTCAAAATTTTCAACAGATGGCTGTTGCTGGAGAAGTTTCACTAGATGAGCATGATATGGACTTTGATCAATTCGGAATACATATAAAAGTCAAATTCAGAGAAAGTGGACAGCTTGAAGTTCTCAGCGCCCATCATCAATCTGGAGGGGAACGATCAGTTTCAACTATTGTTTATCTTGTTTCACTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAATCAAGGAATGGATCCAATAAATGAAAGGAAGATGTTTCAGCAACTAGTGAGAGCAGCAAGCAAGCCAAATACACCACAGTGTTTCTTACTTACCCCAAAGTTGTTACCAGATCTGCAATATAGTGAGGCATGCAGTATATTGAATGTAATGAATGGTCCTTGGATTGAGCAACCCTCAAAGGTCTGGACCGCTGGTGATCGATGGAGTATTATCACTGGACATGTTGGAGAGGCAGTTTGTTAA 3159 0.4084 MANSRPSKRHKINRGEDDYMPGNILEIELHNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIQAFVKRGEDSGHIKITLRGDHKEEQITIMRKINTSNKSEWVLNGNIVPKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALIDKSRALKHVELSLEKNEGTLNQLKERNAELEKDVERVRQRDELLAKAESMKKKLPWLRYDMKQAEYREAKEREKAAAKELEKVAKLLNELKEPIKKQKEEKAALDAKCKKANNRISDNAKKRMELMEKENQLEVELQGKYKEMDELRKQEENRQQKLKQAREELAAAELELENLNPYEPPKDEIHRLREGIVELDYSANQARQNKSQAESEIKHKKFSLIKCKERLMEMNNKSTKCLHALRKSGVERIFDAYKWVQEHRDEFHKEVYGPVLVEVNVSDQSHAGYLEGQVAWYTWKSFITQDPRDRDFLVNNLRNYDVPVLNYTGHDSRREPPPEISADMRALGINSRLDQIFDAPVAVKEVLISQSNLDHSFIGSKETDQKADGVPKLGITSLWTPENHYHWSKSRYGNHVSAVVEQVQRPQLLLNNLNVRDIEDLSSEERELHEHIASLEESLKKFQDEERSFVNQAANLRKQLENIRLEAQNKQKERQAIVRRTEQKKSKLKSMEEQDDLDTELAKLVDQATKCNIQRLHNAIKIKDLLVEAAGYRRSFAEQRMAFIEFDAKIGEAEASLKQHENIALQASSHFNNSKKEAEECRQKLTDLLNYAKSIARLTPDLEKEFLEMPTTIEELEAAIQDTTSQANSILFVNNNILEQYEARQRQIEDLAKKLDADKKESTRCLAELDNIKGKWLPTLRNLVAQINETFSQNFQQMAVAGEVSLDEHDMDFDQFGIHIKVKFRESGQLEVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTAGDRWSIITGHVGEAVC* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0796 1052 Coils Coil 247 302 - -
Mtr3g0796 1052 Coils Coil 379 399 - -
Mtr3g0796 1052 Coils Coil 837 864 - -
Mtr3g0796 1052 CDD ABC_SMC5_euk 925 1027 - -
Mtr3g0796 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 992 IPR027417 -
Mtr3g0796 1052 Coils Coil 621 683 - -
Mtr3g0796 1052 Gene3D - 844 1011 IPR027417 -
Mtr3g0796 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 18 1048 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Mtr3g0796 1052 Pfam RecF/RecN/SMC N terminal domain 24 993 IPR003395 -
Mtr3g0796 1052 Gene3D - 23 232 IPR027417 -
Mtr3g0796 1052 Coils Coil 194 235 - -
Mtr3g0796 1052 Coils Coil 317 365 - -
Mtr3g0796 1052 CDD ABC_SMC5_euk 22 179 - -
Mtr3g0796 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 1003 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0796 Mtr-Chr3 11291097 11308725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0796 5 1050 Structural Maintenance of Chromosomes family AT5G15920 61.281 0.0 1288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0796 K22803 - gmx:100778678 1645.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0796 3 11291097 11308725 Mtr3g0796 3 11291097 11308725 ECH