Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0743 ATGTCAAGCGGAAGGAAAGTTCGTGGTCGCCAAAAGATTGAGATGAAAAAAATGAATAACGAGAGAAACCTCCAAGTGACTTTCTCAAAGTGTCGTAGCGGGCTCTTCAAGAAAGTCAGTGAGTTTTGCACCCTTTGTGGTGTAGATGTTGCTCTAGTTGTATTCTCACCTAGTCAAAAGGTATTTTCTTTCGGTCATCCAAATGTTGATACAATCATAGATCGCTATCTCTTTCGGGTCCCACCGCAAAACAATAGCACCATAGAGTTCATTGAGCCTCATCGTAGCGCCAAAGTGTGTGCGCTCAATGCTGAGTTGATTCAAATCAACAACACACTGAACGAGAAGAAAAAGCTTGGTGATGAGTTGAGTCTTTTGTGCAAGGCGTTCAATGCTTAA 399 0.4236 MSSGRKVRGRQKIEMKKMNNERNLQVTFSKCRSGLFKKVSEFCTLCGVDVALVVFSPSQKVFSFGHPNVDTIIDRYLFRVPPQNNSTIEFIEPHRSAKVCALNAELIQINNTLNEKKKLGDELSLLCKAFNA* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0743 132 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mtr3g0743 132 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Mtr3g0743 132 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mtr3g0743 132 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mtr3g0743 132 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mtr3g0743 132 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mtr3g0743 132 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mtr3g0743 132 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 126 - -
Mtr3g0743 132 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Mtr3g0743 132 PANTHER MADS BOX PROTEIN 8 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0743 Mtr-Chr3 10293449 10293847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0743 5 123 Type I MADS-box Gene Family AT5G60440 57.851 5.82e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g0743 SRF-TF 7.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0743 - - mtr:MTR_1g106070 186.422