Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0734 ATGATGTATTCACAAAGTTTAACTCTTTCACTTTTCACCATTTTAGCCTCATTTGGTTTGTGTTTTGGCTCTTACTTAGAAGAAAGACATTATTCAACAAATCATCAACCTTACAATGAGAGGTTGGTGAAACCAAGACATGAACAATTTAGTTTCATGGCAAGGGCTCATCATCCATCGATTGCGCCTTCGCCGCAATCTCATAACACGGTTAATGTCAACGACTATGGAGCCAAATCTAATGATGGACAAGTTGATAATGAGGCATTTGAAATGGCATGGAATGAGGCATGTTCTAATGGGAAGGTTCTTGTGGTACCTAAACAAAGTGTCTATCATCTAAATCCTATAACATTTTCAGGGCCATGCCAACCCAATACTGCATTAAAGATCTATGGAACAATCAAAGCATGGCCTAGAATTTCAGCATATGGAGCAGATAGAAAGCTATGGATCAAGTTTGAGAATGTCACAAATCTCATAGTTGATGGTGGTGGTACCATTAATGGAAATGGAAGAATATGGTGGGAAAATTCTTGCAAAGTCAATGAAAGCCTTCCATGCAAAGGAGCACCAACTGCTGTGACTTTTGATGAATGCAATAATTTGAAAGTGGATAAGATAAGATTCAGAAATGCACAACAAATGCATTTAAGGATTCAAGGATGCAACAATGTTTGGGCATCAAATCTTATAGTCACAGCACCAGGGCATAGTCCCAACACTGATGGAATTCATATTACTCATTCACAAAATGTTTTCATAACCAACAGCACCATTGGGACAGGTGATGATTGTATTTCAATTGTAAGTGGGTCCAAAAATGTTCGAGCAACAGATATTACATGTGGACCAGGACATGGAATCAGCATTGGAAGCTTAGGTGGAGGTAACACACAAGCTGAAGTGTCTAATGTGGAAGTTAACAGAGCCACACTAATAGGAACCACTAATGGAGTCAGAATAAAGACTTGGCAGGGAGGTTCTGGCTATGCAAGAAACATCAAATTTATCAACATAGTTGTGCGAAATGTGACTAATCCCATAATCATAGATCAAAAATATTGTGACCAAAAAAAGAAATGTCAAGAACAGAACTCAGCTGTGGAATTGAGCAATGTGATGTACCAAAACATAAAAGGAACAAGTGCTTCAGAAGTTGCAATCAAACTTGAATGTAGCAAAGCTGTCCCATGCAAAGGAATTCACTTGCAAGATGTGAAAATAACAGGAGAAAACATTAAGGACACCATTGCAAAATGTGACAATGTTAAATATTCAAATAGTGGAATGTTCTTTCCTAAGTGTCACCCTTGA 1317 0.3797 MMYSQSLTLSLFTILASFGLCFGSYLEERHYSTNHQPYNERLVKPRHEQFSFMARAHHPSIAPSPQSHNTVNVNDYGAKSNDGQVDNEAFEMAWNEACSNGKVLVVPKQSVYHLNPITFSGPCQPNTALKIYGTIKAWPRISAYGADRKLWIKFENVTNLIVDGGGTINGNGRIWWENSCKVNESLPCKGAPTAVTFDECNNLKVDKIRFRNAQQMHLRIQGCNNVWASNLIVTAPGHSPNTDGIHITHSQNVFITNSTIGTGDDCISIVSGSKNVRATDITCGPGHGISIGSLGGGNTQAEVSNVEVNRATLIGTTNGVRIKTWQGGSGYARNIKFINIVVRNVTNPIIIDQKYCDQKKKCQEQNSAVELSNVMYQNIKGTSASEVAIKLECSKAVPCKGIHLQDVKITGENIKDTIAKCDNVKYSNSGMFFPKCHP* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0734 438 Gene3D - 58 435 IPR012334 -
Mtr3g0734 438 PANTHER POLYGALACTURONASE 7 437 - -
Mtr3g0734 438 SMART pbh1 223 249 IPR006626 -
Mtr3g0734 438 SMART pbh1 332 353 IPR006626 -
Mtr3g0734 438 SMART pbh1 303 324 IPR006626 -
Mtr3g0734 438 SMART pbh1 250 271 IPR006626 -
Mtr3g0734 438 ProSitePatterns Polygalacturonase active site. 280 293 IPR000743 GO:0004650|GO:0005975
Mtr3g0734 438 SUPERFAMILY Pectin lyase-like 61 437 IPR011050 -
Mtr3g0734 438 PANTHER - 7 437 - -
Mtr3g0734 438 Pfam Glycosyl hydrolases family 28 103 427 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0734 Mtr-Chr3 10202884 10207364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0734 2 436 Glycoside Hydrolase AT3G07970 53.452 6.59e-156 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0734 K01184 - gmx:100796446 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0734 3 10202884 10207364 Mtr3g0734 3 10202884 10207364 ECH
Mtr8g1204 8 14691596 14693218 Mtr3g0734 3 10202884 10207364 PCT