Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0696 ATGGCAACACTTGGAGGAATTTCTTCAAGCTTGCTCTCTCACTCAAAACCCTGCACTTCTGTTTTTCGACATCTCTTCCTTCGTAGAATCACTTCCAAGATTTTTGTTAAAGGTTTAGCCTTTTCTACTACAGAGGAGAAATTAGCTGAAGCTTTTTCTCAATACGGAAATGTTGTCAAAGCTGATATAGTATTGAATAAAGCCAAGAAAAGATGCAAAGGTTTTGGATATGTGACTTTTGCTGAGGAGGAAGAAGCCCGCAAGGCACAAATTGGCATGAATGGAAAGATATTACACGGACGTGTCTTATATGTAGACATGGATCCACCTAACGAGCAAAAAAATAAAATAAAGCAGGCAACTAAAAATACAGAGGTTGATAACGAAGATGTGCATATGGAATGA 405 0.3802 MATLGGISSSLLSHSKPCTSVFRHLFLRRITSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKILHGRVLYVDMDPPNEQKNKIKQATKNTEVDNEDVHME* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0696 134 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Mtr3g0696 134 SUPERFAMILY RNA-binding domain, RBD 32 115 IPR035979 GO:0003676
Mtr3g0696 134 Coils Coil 126 134 - -
Mtr3g0696 134 PANTHER TRANSFORMER-2-RELATED 7 115 - -
Mtr3g0696 134 Gene3D - 27 131 IPR012677 -
Mtr3g0696 134 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 103 IPR000504 GO:0003723
Mtr3g0696 134 PANTHER RNA RECOGNITION MOTIF 7 115 - -
Mtr3g0696 134 SMART rrm1_1 33 106 IPR000504 GO:0003723
Mtr3g0696 134 MobiDBLite consensus disorder prediction 113 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0696 Mtr-Chr3 9848694 9850042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0696 32 105 Eukaryotic Initiation Factors Gene Family AT1G22760 39.189 1.66e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0696 - K13195 gmx:100527061 146.362