Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0679 ATGTCCAACAGGGTTTGCAAGTTTTATGCGCGAGGCGTATGTTTGAAAGGCGACCAATGTGATTTTTCTCATCAGAGAAAGGATACTGCATCTGATATTTGCTCTTATTATCAGAAAGGGTCTTGTGCTTATGGTAGTCGGTGCAGATATAAGCACGTCCGAGCTTCTCAAGCATCATCTTCAGCATCTATGGTTTCAGATTCTGCTGTGCCTGTGGCTCGTAGTGCTAAAGTTGCATCAAATTGGGTTCCGAAGGTTACAAAGGTACCTTCACCTGACAAGCGTGGCGTAAAGGGTTTACAACGCAAGCATCAGGACTCTACCGATGTTGGTGAATCCAGTACTGGTAGTGCTAGACCACATGAAAATTTGTTTTGTAAATTTGCTGCTGCCAACTGCCCCGGTGGATGTTCTCGTATTCACGGAAATCAATGCTTGTACTGTAGAAAATATTGCCTGCATCCTACTGATAAAAAGGAAAAAGAAAATCATTTGAGGACTTGTGACAAAAAGGAAAAGTACCTTCTGGCTTTGAAAAACAGTGAAGAGATAGAATGCAATGTTTGTCTTGAGCGTGTCCTTTCGAAACCCAAGCCATCAGAATGTAAGTTTGGGTTGCTTCCAGAATGTGATCACGCTTTCTGTTTGTCATGTATCCGCAATTGGCGTAGTAGTGCCCCAACCTCTGCAATGGAAATCGGTAGCAACACCAATACAGTGAGAACCTGCCCTGTTTGCCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTTTACTACAAAGGAAGAAAAACAGGAGATTATTGATAACTACAAGGCAAACTGCAGATTGATTGATTGCAAACATTTTGATTCTGGAAATGGAAATTGTCCATTTGGGGCTAGCTGTTTCTACAAGCATACAGTGAAGCCTGGCTCATACACATGGAGACACCGCAGACCACCACCTCAACGCAGACAAAACCATTTCGATATGCATGACATGTTGGATGTGCTCGGTGAGGTTGATCTATCAAGCGGAGAATTTTATTCCATCATGAGGGACTCAGATTTTTTTGAGGGAATGGATCCATTTGAGATGATGGCATTATCAGATTCGCTGGCTGGCGGTTCAGGTCCTTGTTTGGGTCCTTTCGATTCCGACGATGATGATGATGATGGGTTTCGTGTTTCTCGGATGGCTGCTATGCAAGAGGCCATGGCTATTGGGATGGATGCTTTTGGCCCTGATGATGATGAGGAAGAGTTTAATGTTTTTCGAATGGCTGCTATGCAAGAGGCCATGGTTTCTGGGATAGATGATTTTGGCCCTGATGATTTTCCTGGAATTGATCCTATGGATGCAGCTTTGATATCAATGATGATGCATTCTCATATGGACGACGAAGAAGATGATGAAGATTACGAGGATGAAGAAGAATATACTGATGATGAATATTAG 1446 0.4281 MSNRVCKFYARGVCLKGDQCDFSHQRKDTASDICSYYQKGSCAYGSRCRYKHVRASQASSSASMVSDSAVPVARSAKVASNWVPKVTKVPSPDKRGVKGLQRKHQDSTDVGESSTGSARPHENLFCKFAAANCPGGCSRIHGNQCLYCRKYCLHPTDKKEKENHLRTCDKKEKYLLALKNSEEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRSSAPTSAMEIGSNTNTVRTCPVCRKLSYFVIPSGIWFTTKEEKQEIIDNYKANCRLIDCKHFDSGNGNCPFGASCFYKHTVKPGSYTWRHRRPPPQRRQNHFDMHDMLDVLGEVDLSSGEFYSIMRDSDFFEGMDPFEMMALSDSLAGGSGPCLGPFDSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDEY* 482
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0679 481 PANTHER MAKORIN-RELATED 1 481 IPR045072 -
Mtr3g0679 481 Gene3D - 1 69 - -
Mtr3g0679 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 258 IPR013083 -
Mtr3g0679 481 MobiDBLite consensus disorder prediction 91 109 - -
Mtr3g0679 481 Pfam RNA-binding, Nab2-type zinc finger 281 302 - -
Mtr3g0679 481 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Mtr3g0679 481 MobiDBLite consensus disorder prediction 462 481 - -
Mtr3g0679 481 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 481 - -
Mtr3g0679 481 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Mtr3g0679 481 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Mtr3g0679 481 SMART c3hfinal6 276 304 IPR000571 GO:0046872
Mtr3g0679 481 SUPERFAMILY RING/U-box 176 253 - -
Mtr3g0679 481 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Mtr3g0679 481 SUPERFAMILY CCCH zinc finger 29 52 IPR036855 GO:0046872
Mtr3g0679 481 CDD RING-HC_MKRN 186 247 - -
Mtr3g0679 481 MobiDBLite consensus disorder prediction 86 117 - -
Mtr3g0679 481 Pfam CCCH-type zinc finger 33 52 IPR041367 -
Mtr3g0679 481 Pfam Zinc finger, C3HC4 type (RING finger) 186 246 IPR018957 GO:0046872
Mtr3g0679 481 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Mtr3g0679 481 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Mtr3g0679 481 ProSiteProfiles Zinc finger RING-type profile. 186 247 IPR001841 -
Mtr3g0679 481 SMART ring_2 186 246 IPR001841 -
Mtr3g0679 481 MobiDBLite consensus disorder prediction 458 481 - -
Mtr3g0679 481 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Mtr3g0679 481 ProSiteProfiles Zinc finger C3H1-type profile. 276 305 IPR000571 GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr3g0679 Mtr-Chr3 9415787 9422344 Tandem
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr3g0679 zf-C3HC4 1.1e-06 CL0229
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0679 K15687 - gmx:100788886 639.032