Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0668 ATGGGTGCTATGTATGAAGAGCTAAGAAGAAACCAAGAAATGGATTCTTCAAGTATTATTCATTCAAAACAACATTATCAACAACAAAATTCTGGACTACTAATGAGGTATAACTCGGCTCCAACCTCGTTGTTTACAAACCTAATCGACAACAACGCTCAAAACTTTATCAACAATGAAGAATCGTTTACAAATGAGAGTTATCTTCCATCCACAAGTTCAGAAATGGATACCATGTTATCCAAGTTGATATCATCCAACAATGGATGGAACAATTCTGAAGAAAATTTGCAAGAGTTTGATGTGAAACCTGTGAAACAAGAAATAGGTGAATCTGTTGCACAACAGAATGGTAATTACTCTTATGGTGGATCTGAGTTGATTTACCAAGGCTTTTCAAATGGTTCTGGTAATGGTTTTTATGGCTCTTTTGGTGGAGTTAACACTATGGAATCAGATGATTCTAATCAATCTAAAATTGGTGTTAGGAATTGCTCCAATCTTATTAGGCAAAAGAGTTCACCTGCTGAATTTTTCTCTAATGAAAATGGTTTTGCAACATTGACATTGAGAGAGGTAGAAAGCTTTAAAGCCAATGGTATCTCAAATGGTACACTTAACTTCTCATCTAGGCCATCTACATGCTTGAAAAGGATGCCACAAATAGCTGAAAATGGAATTCAAAGCTTAGAATCAAATTGTGACCAAACTATAAACCTAGTAAATGAAAATGGTAGCTCCAAATTCACCAATGAATTTTGGGACAACTCTGCATTCAATGCACACAAAACAGAAAATGAAGATGAAATAATGTTTTCTACTACAAATGGTTTGGACTCTCAAGAAGCAGATTTTGGCTATCAAAATCTTGGTTTGACTCATCATTTGAGTCTTCCTAGTTCTTCTACTAAGATGACATCTATGGAGAAGTTTCTTCAAGTTCAAGGTTCTGTTCCTTGTAAAATTCGAGCGAAAAGAGGGTTCGCAACTCATCCAAGAAGCATTGCAGAGAGGGTCAGAAGAACAAGAATTAGTGACAGAATCAAGAAACTGCAAGGTCTTTTCCCAAAATCAGATAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTACAAGAACAAGTTCAGATACTCACAGATTGTAAGGACAAATGCAAATGTGCAAGTCATGAGAAGAAACACTGTAAACCTTGTAGCTGA 1221 0.3595 MGAMYEELRRNQEMDSSSIIHSKQHYQQQNSGLLMRYNSAPTSLFTNLIDNNAQNFINNEESFTNESYLPSTSSEMDTMLSKLISSNNGWNNSEENLQEFDVKPVKQEIGESVAQQNGNYSYGGSELIYQGFSNGSGNGFYGSFGGVNTMESDDSNQSKIGVRNCSNLIRQKSSPAEFFSNENGFATLTLREVESFKANGISNGTLNFSSRPSTCLKRMPQIAENGIQSLESNCDQTINLVNENGSSKFTNEFWDNSAFNAHKTENEDEIMFSTTNGLDSQEADFGYQNLGLTHHLSLPSSSTKMTSMEKFLQVQGSVPCKIRAKRGFATHPRSIAERVRRTRISDRIKKLQGLFPKSDKQTSTADMLDLAVEYIKDLQEQVQILTDCKDKCKCASHEKKHCKPCS* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0668 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 378 IPR011598 GO:0046983
Mtr3g0668 406 CDD bHLH_AtbHLH_like 333 385 IPR045239 -
Mtr3g0668 406 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 23 398 - -
Mtr3g0668 406 Pfam Helix-loop-helix DNA-binding domain 334 379 IPR011598 GO:0046983
Mtr3g0668 406 Gene3D - 330 403 IPR036638 GO:0046983
Mtr3g0668 406 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 23 398 - -
Mtr3g0668 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 394 IPR036638 GO:0046983
Mtr3g0668 406 SMART finulus 334 384 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0668 Mtr-Chr3 9204256 9207586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0668 19 396 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 32.398 1.58e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr3g0668 HLH 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0668 - - gmx:100812802 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0668 3 9204256 9207586 Mtr8g1136 8 13847320 13852007 ECH
Mtr3g0668 3 9204256 9207586 Mtr3g0668 3 9204256 9207586 ECH