Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0654 ATGGCTTCTCTACTCTCACAACTCAATTTCCTTTCTCTAACTCACAACAACACTCACACAAACTTTACCTTAAAACCCAAAACAACAACACCTTCTTCTCTTGTCGTTACGACACGTCGTTTTAGAAAACACTTTGTTGTTTCTTCTGAACAAGCCACGGTTGATTCTCCTGCTCTTAGAAAACTCTACGTTGGTAACATTCCTCGTACTGTTAGTAATGATGAACTTGAGAAAATTGTTCAAGAACATGGTGCTGTTGAAAAAGCTGAGGTTATGTATGATAAATACTCTAAAAGGAGCCGTCGTTTTGCATTTGTTACAATGAAAACCGTTGAGGATGCAAACGCAGCAGCTGAGAAACTCAATGGCACTGAAATTGGAGGGCGTGAGATTAAAGTGAATATAACTGAAAAACCTTTAACAACGGAAGGTTTGCCAGTCCAGGCCGGGGAATCCACATTTGTTGACAGTCCTTACAAGGTATATGTGGGAAATCTGGCTAAGAATGTAACATCCGATAGCCTTAAAAAATTCTTCTCGGAAAAAGGAAATGCTCTTAGTGCCAAGGTTTCACGGGCTCCTGGGACCTCAAAATCCAGCGGTTTTGGCTTTGTTACTTTTTCATCAGATGAGGATGTAGAAGCTGCTATCTCATCTTTCAACAATGCTTTGTTAGAAGGGCAGAAAATACGTGTGAATAAGGCGTAG 708 0.404 MASLLSQLNFLSLTHNNTHTNFTLKPKTTTPSSLVVTTRRFRKHFVVSSEQATVDSPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0654 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Mtr3g0654 235 Gene3D - 37 148 IPR012677 -
Mtr3g0654 235 PANTHER OS02G0815200 PROTEIN 9 235 - -
Mtr3g0654 235 SMART rrm1_1 61 134 IPR000504 GO:0003723
Mtr3g0654 235 SMART rrm1_1 160 233 IPR000504 GO:0003723
Mtr3g0654 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 132 IPR000504 GO:0003723
Mtr3g0654 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 231 IPR000504 GO:0003723
Mtr3g0654 235 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 9 235 - -
Mtr3g0654 235 SUPERFAMILY RNA-binding domain, RBD 45 138 IPR035979 GO:0003676
Mtr3g0654 235 CDD RRM_HP0827_like 61 138 - -
Mtr3g0654 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 235 IPR000504 GO:0003723
Mtr3g0654 235 SUPERFAMILY RNA-binding domain, RBD 155 235 IPR035979 GO:0003676
Mtr3g0654 235 Gene3D - 149 235 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0654 Mtr-Chr3 8912693 8922420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0654 62 232 Eukaryotic Initiation Factors Gene Family AT1G22760 26.901 7.52e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0654 K13126 - gmx:100783567 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0654 3 8912693 8922420 Mtr3g0654 3 8912693 8922420 ECH