Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0586 ATGGAAGAAGATCAAGAAGTGATGAAATTGAAACATGTGTGCAAATTCTGCAGAAAAAGTTTTGCTTCTGGTAAATCATTAGGTGGTCACATGAGGTCTCATGATCATGATCATGATGATGATTATGATGATGATCATGATGATGATGGTGATGAGTATGTTGTTGCTGCAAGAAGAAGAATGAAGAAGGAAGAAGGTTATGGTCTTAGAGAGAATCCAAAGAAAACTTGGAGAGTACTCACTGATTCAACTAATGAACAAGAGATTCAAGATCCTTTTGATGTTGTTTTGGATAAATTGTGTAAAGAATGTGGTAAAGGGTTTCAATCTATGAAAGCTTTGTTTGGTCACATGAAGTGTCATAAGAAGAAGAATAGTTTTGAATTGGATGAAGAAGAAGAAGAAGAAGATGATGATTCTAATGCAACTGTTCTTCCAAAAAGAAAGAGAAGATCCAAAAGAAAGTTAAGAACAAGGTACAATAAGAGTAATACTTCAACTTCTGTTGTGAATTTTGGTGATAATTCTTTAGATTCTATTGCTGAATCTTCTGATAATAGTGATGAAAAGGAACAAGAAGAGGTTGCTATGAGTTTGATAATGCTTAGTAGAGATGTAAGACCTTGGTTTGGTATCAATTCTATTGCTGAATTTTCTGATAATAATGATGATAATGATAATGATGAGAATTCTTTGGAATTCGAAGCGCCGTTAACTCATTTAGTTTCTAAGATTGAAGGGAAAAAGTTTATCACTAATAGTTCTGAAATTGTGAAAATGAACAAAAAACCAAAGAAGTTAGATTTTGGTAATGTTGTTTCTTCAGATGTTATGTCCAAAGGGAAAAGTTTAGAAGTTTTTGATAATGATGATGGATTGAAGATGAAGAAAGCTAGAGTTTCTGTTGTTGAGAATGGAAAAGATGAGAAGAAGAAAATGGAGATTGAGGTTGATTCTGATTTAGCATTTGAGGTCAATGTTGTTGATTCTGAAACTAAGGTTACATCAGAAGGTGAATTCAGGAAGAGAAAATATCAGAAAAGAGGAAAATTTGAATGTGCTACTTGCAACAAAAAATTTCAATCTTATCAAGCTCTTGGAGGACATAGAGCTAGTCATAAGAGAACCAAAGGCTTTTCTGCTTCAAGAAATGATCAAAGCAGTGAGAATGGAAACAGTGCTGAATTGGAATTGGAAGTAGATGCTGAGGGAAGAATGGTAGAAAGTGAAAGAGTTATGCTTAATGAAGAAGTTGCTGAAATGAGGGATTATCTTGATCTTGATCTTAATCTTCCTGCTGCAAGTATTGATGATGAAAGAAATGGTCATTCTGAGATTTACAAACCATGGTGGTTAGTTGGAAGCAGTCTCAAACAAGAGGCAATGGTAGGTCTACTATCAAACTAG 1407 0.339 MEEDQEVMKLKHVCKFCRKSFASGKSLGGHMRSHDHDHDDDYDDDHDDDGDEYVVAARRRMKKEEGYGLRENPKKTWRVLTDSTNEQEIQDPFDVVLDKLCKECGKGFQSMKALFGHMKCHKKKNSFELDEEEEEEDDDSNATVLPKRKRRSKRKLRTRYNKSNTSTSVVNFGDNSLDSIAESSDNSDEKEQEEVAMSLIMLSRDVRPWFGINSIAEFSDNNDDNDNDENSLEFEAPLTHLVSKIEGKKFITNSSEIVKMNKKPKKLDFGNVVSSDVMSKGKSLEVFDNDDGLKMKKARVSVVENGKDEKKKMEIEVDSDLAFEVNVVDSETKVTSEGEFRKRKYQKRGKFECATCNKKFQSYQALGGHRASHKRTKGFSASRNDQSSENGNSAELELEVDAEGRMVESERVMLNEEVAEMRDYLDLDLNLPAASIDDERNGHSEIYKPWWLVGSSLKQEAMVGLLSN* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0586 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Mtr3g0586 468 SMART c2h2final6 12 34 IPR013087 -
Mtr3g0586 468 SMART c2h2final6 99 121 IPR013087 -
Mtr3g0586 468 SMART c2h2final6 351 373 IPR013087 -
Mtr3g0586 468 SUPERFAMILY beta-beta-alpha zinc fingers 100 127 IPR036236 -
Mtr3g0586 468 Pfam C2H2-type zinc finger 101 124 - -
Mtr3g0586 468 Pfam C2H2-type zinc finger 351 375 - -
Mtr3g0586 468 Pfam C2H2-type zinc finger 12 34 - -
Mtr3g0586 468 ProSitePatterns Zinc finger C2H2 type domain signature. 14 36 IPR013087 -
Mtr3g0586 468 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Mtr3g0586 468 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 407 468 - -
Mtr3g0586 468 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 399 - -
Mtr3g0586 468 MobiDBLite consensus disorder prediction 367 394 - -
Mtr3g0586 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Mtr3g0586 468 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 407 468 - -
Mtr3g0586 468 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 399 - -
Mtr3g0586 468 SUPERFAMILY beta-beta-alpha zinc fingers 11 37 IPR036236 -
Mtr3g0586 468 Gene3D Classic Zinc Finger 2 126 - -
Mtr3g0586 468 MobiDBLite consensus disorder prediction 127 193 - -
Mtr3g0586 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 351 378 IPR013087 -
Mtr3g0586 468 ProSitePatterns Zinc finger C2H2 type domain signature. 353 373 IPR013087 -
Mtr3g0586 468 MobiDBLite consensus disorder prediction 25 50 - -
Mtr3g0586 468 SUPERFAMILY beta-beta-alpha zinc fingers 349 378 IPR036236 -
Mtr3g0586 468 MobiDBLite consensus disorder prediction 161 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0586 Mtr-Chr3 7752127 7754296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0586 11 222 C2H2 Transcription Factor Family AT1G26610 41.629 5.19e-32 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g0586 zf-C2H2_6 9.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0586 - - mtr:MTR_3g023760 874.389