Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0569 ATGGAACTGACAGAAGAACAACGGAAACAAATCGAAGCGAATCGACTCGCCGCAATCGCAAAACGAAAAGCATTCTTAGAATCCAATCCCCATCAACAACAACAACAACAACGAAACCCATGGAACCTTTTCAAATGCCAGAAAATTTCTCAACCTAAACCTCAACCCGATTTCAAATTCCTCGCGAGACTCGAAATTTGTTCTCATGATTCTTTCACCATTACTCCTCTTCCGATACCGTATTTCGCTTTTCCTAGCTTCGATGTTTGTTTCGGCATTCTCAATAACATTCTCGCACAAATGAATGTGGATCCATCACATTTTACTCAAACAAGTGCGGGTGGGAAAGCCTGTGTGTTTAAATTGGCAGACTACTGTAGCATTTTGAAGTTGTTAAAGGCGGAGATTAAGGTTGAGGAGATTCCTTGGAGCACTTTCAATGTTGTTGAGAAGCTTTCACATTTGGAAGGGAGGTGGACTCCGGTGAGGCCGGAACACTTGAACGATGATGAGGTTGATGGTTTGATCGGAAAGTTGCCTAAGAGTTTACTTGATGTATTGTTGCCGTTTCAAATGGATGGTTTAAAGTTTGCACTTAGAAGAGGTGGTCGATGTCTCATTGCTGATGAAATGGGACTTGGGAAGACACTTCAGGCTATAGCTATTGCGGGATGTTTCATCGATGAAGGATCTATACTTGTTGTCTGCCCTGCTGTTTTGCGGTATTCATGGGCTGAAGAAATTGAGCGGTGGCTTCCTTTCTGCTTGCCTGCCGATATTCACCTCGTTTTTGGCCATCAAGACAATCCTGTAAATCTAACAAGATGCCCTAGAATTGTGGTCATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAGCGTAAGTGGGCTCTTCTGATTGTTGATGAATCTCATCATGTACGTCCTACAAAGAAAACCTCAGAACCAGGAGAGATAAAGGCTGTTCTTGATGTGGCTTCAGAAGTCAAGCGTATAGTTCTGCTGTCAGGGACACCTTCTTTGTCAAGACCGTTCGACATATTTCATCAGATAAATATGTTATGGCCAGGTTTGTTGGGGACAACAAAATATGAGTTTGCAAAAACTTATTGTGATCTCAAATATATCAAGGGTGTCCAAGGAAAATATTTTGCGGATTATTCAAAGGGCATTCGCTTGGAGGAGTTGAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGGCTCAAGGAACATGTGTTGCAACAGTTACCTCCAAAACGCCGGCAAATTATAAGACTGTTGCTGAAGAGGTCAGATATAGTTGCTGCAAAAACTGCAGTTGGGGTATTGAAGATTGATTCCTCTGAAAATGCTAGTGAAGATATGCCTTTGGACAGTTTGGATGAACATGATGTTTCCGCAAAAACTGCAGTTGGGGTATTGAAGATTGATACCTCTGAAAATGCTAGTGAAGATATGCCTTTGGACAGTTTGGATGAACATGATGTTGTCTCAAAAACTGCAGTTGGGGTATTGAAGATTGATGCCTCTGAAAATGCTAGTGAAGATATACCTCTGGACAGTTTGGATGAACATGATGGAAAGCTTACTTATCAAGAGCTTGGAATTGCAAAACTATCTGGGTTTCGTGAATGGCTTTCATTCCATCCACTTATTGCAGGATCAGAGAATGCTTCAAAGATGATAATTTTTGCTCATCACCACAAGGTTCTTGACGGAGTACAGGAGTTTATATGTGAGAAAGGAGTAGGTTTTGTGCGAATAGATGGACATACGCTACCTAGAGATAGACAATCCGCAGTAACCTCATTTCGATCATCGCCGGAGATTAAAATTGCGATAATAGGTGTTCTAGCAGCAGGTTTTGGACTTGATTTCTCGGCAGCACAAGATGTTGTGTTCTTGGAGCTACCTCAGAGCCCAACAGTGATGCTTCAGGCTGAGGACAGAGCTCATCGACGAGGGCAAACAAATGCAGTTAACATATACATATTCTATGCAAAGGATACTTGGGATGAATCACATTGGAAATATTTGAACACAAGTTTGCATCGTGTTTCATCTACAACTGATGGCAAATATGATGCGGTGAAAGGGCTAGAGGTTGAACGTGTTTCTTTTCTAAACCCATCCTCAAATATTGATAGATCCGAAGAACAATCTGCATCTGAAGATGCATCAATTGAAACACAGTTGGATAGGCAACCCTCTGCAGTGAAATCAAATGAAACAGAAGCAAACCAAGATGATGAATTTGGTCTTGTAAACAATATAAGTCAGAGTGCTAATATTATGGTTGATAGTGCTTCCTGCATAGATTTAGGTCAGGCTTCAGTTTTGGATGGAAATCTTGATGCAGATGTTTTTTATGCTGGGGATAGATGTTCTGAAGAGAGTTTAGAGAACAATGATAACATAATAGAGGATAAGAAATCAACTTCAACAACAGATGCAGATGACAACCAGCCCACTCATCCTGTTGAAGCCGAAGAACATTGTTCTCATCAAGTTAATTCTCTGCGGTTTGAGGTTAGCCCGTACACAGGAAGGATACACCTCTATACGTGTATTTTGGGTAAAGATGCAAGACCACAGCCACTTTATGAAAATTTTCGACCAGAGGACCTTGAGTTGCTGAGTCCTGCTGATGCTGATGCTGATGAGAAACGGTGTATAGAGTCTGCATCTGTCAAGGATAACCCTGCTTATAGGAATGCTCTTCTGGATTTTTCAAATGAGTGGAAGAATTTAAGGCCAATTGAACGCAATAAGTTACTTGGAAAACCATTACAGCTTCCTTTGGCTGTCGAATTGTGCTACTTAAGTGAAAGTACTAACCACAACAACAAGGGACTAATAAATGGTGGAAGCAAACGGCGCATGACTCCTTTAGTGGACATCAGCTATCCCTTACCATCAGATGCTGTTTGGAAAAAGGTTTATCTTAGAAGTGGCCGTGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGCCTGAAGGATGAGCCTCTTTGTAAGCTTTGTCAAAAGCAATGCATGGGTAACAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGTAACCTTGTCTGCCATCAAGAGTATCGCATGAGAACTAGCAACAGATTCCTCCGTCAGGAACTTTTCCAAATTGAGCAAGGTGTTTGCACAAATTGCCAATTGGACTGTCATAAGCTTGTTGTGAATACAAGACCTTTGTCCCTGGAAAGACGACGAGGGTACATTGAAAAAGTAGCACCAAATATTGCAAAGCGGAAGAAGATGTTTGAGAAGCTTATCAAAGATCCAATTGAAGGTAATGCCTGGCATGCTGATCACATTGTTCCAGTATATAAAGGCGGAGGTGAATGCAAACTCGAGAACATGAGAACTCTTTGTGTGGCCTGCCATCATGATGTTACTGCTGTACAATGTGCTGAGCGACGCATTATAAGAGCAAATGCCCGTAAACAACTAAAAGTATTGATGGATACCATGAAAAATAATACGAAGGGTGCAGCTGGTAATAATAATAATGAGGACCTAATGCTTCACGGGGTGCAAGAAAGTATGCATGAGGATGATATTTTAGTCCCGGTTCCTGGAAGTGCCTATTCACTAGCTAACAGCCAAGAAAGTGGAGATGCAGCTTGTTAA 3672 0.4137 MELTEEQRKQIEANRLAAIAKRKAFLESNPHQQQQQQRNPWNLFKCQKISQPKPQPDFKFLARLEICSHDSFTITPLPIPYFAFPSFDVCFGILNNILAQMNVDPSHFTQTSAGGKACVFKLADYCSILKLLKAEIKVEEIPWSTFNVVEKLSHLEGRWTPVRPEHLNDDEVDGLIGKLPKSLLDVLLPFQMDGLKFALRRGGRCLIADEMGLGKTLQAIAIAGCFIDEGSILVVCPAVLRYSWAEEIERWLPFCLPADIHLVFGHQDNPVNLTRCPRIVVISYTMLHRLRKSMLERKWALLIVDESHHVRPTKKTSEPGEIKAVLDVASEVKRIVLLSGTPSLSRPFDIFHQINMLWPGLLGTTKYEFAKTYCDLKYIKGVQGKYFADYSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQIIRLLLKRSDIVAAKTAVGVLKIDSSENASEDMPLDSLDEHDVSAKTAVGVLKIDTSENASEDMPLDSLDEHDVVSKTAVGVLKIDASENASEDIPLDSLDEHDGKLTYQELGIAKLSGFREWLSFHPLIAGSENASKMIIFAHHHKVLDGVQEFICEKGVGFVRIDGHTLPRDRQSAVTSFRSSPEIKIAIIGVLAAGFGLDFSAAQDVVFLELPQSPTVMLQAEDRAHRRGQTNAVNIYIFYAKDTWDESHWKYLNTSLHRVSSTTDGKYDAVKGLEVERVSFLNPSSNIDRSEEQSASEDASIETQLDRQPSAVKSNETEANQDDEFGLVNNISQSANIMVDSASCIDLGQASVLDGNLDADVFYAGDRCSEESLENNDNIIEDKKSTSTTDADDNQPTHPVEAEEHCSHQVNSLRFEVSPYTGRIHLYTCILGKDARPQPLYENFRPEDLELLSPADADADEKRCIESASVKDNPAYRNALLDFSNEWKNLRPIERNKLLGKPLQLPLAVELCYLSESTNHNNKGLINGGSKRRMTPLVDISYPLPSDAVWKKVYLRSGRGKKEKEYTQGWSLKDEPLCKLCQKQCMGNNAKTPEYFEDLFCNLVCHQEYRMRTSNRFLRQELFQIEQGVCTNCQLDCHKLVVNTRPLSLERRRGYIEKVAPNIAKRKKMFEKLIKDPIEGNAWHADHIVPVYKGGGECKLENMRTLCVACHHDVTAVQCAERRIIRANARKQLKVLMDTMKNNTKGAAGNNNNEDLMLHGVQESMHEDDILVPVPGSAYSLANSQESGDAAC* 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0569 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 411 IPR027417 -
Mtr3g0569 1223 Gene3D - 1035 1171 - -
Mtr3g0569 1223 Gene3D - 486 751 IPR027417 -
Mtr3g0569 1223 Pfam HNH endonuclease 1108 1144 IPR002711 GO:0003676|GO:0004519
Mtr3g0569 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 709 IPR027417 -
Mtr3g0569 1223 MobiDBLite consensus disorder prediction 728 752 - -
Mtr3g0569 1223 SMART helicmild6 576 659 IPR001650 -
Mtr3g0569 1223 MobiDBLite consensus disorder prediction 805 820 - -
Mtr3g0569 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 360 IPR014001 -
Mtr3g0569 1223 Gene3D - 167 407 IPR038718 -
Mtr3g0569 1223 CDD SF2_C_SNF 541 669 - -
Mtr3g0569 1223 SMART ultradead3 183 379 IPR014001 -
Mtr3g0569 1223 MobiDBLite consensus disorder prediction 715 752 - -
Mtr3g0569 1223 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1168 - -
Mtr3g0569 1223 CDD HNHc 1106 1146 IPR003615 -
Mtr3g0569 1223 Pfam Helicase conserved C-terminal domain 558 659 IPR001650 -
Mtr3g0569 1223 Pfam SNF2-related domain 205 438 IPR000330 GO:0005524|GO:0140658
Mtr3g0569 1223 MobiDBLite consensus disorder prediction 805 836 - -
Mtr3g0569 1223 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1168 - -
Mtr3g0569 1223 CDD DEXHc_HARP_SMARCAL1 187 411 - -
Mtr3g0569 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 551 705 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0569 Mtr-Chr3 7516485 7532757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0569 564 677 RAD5 or RAD16-like Gene Family AT1G11100 36.842 7.88e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr3g0569 SNF2_N 1.3e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0569 K25861 - jre:108979869 1410.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0569 3 7516485 7532757 Mtr3g0569 3 7516485 7532757 ECH