Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0561 ATGGATTTGCATGAAATACCAAACTCTCCTCACCCTCACCATGATCAATTTGAAATTGTCATCTTAGTGGGTCCAGATCCATTCACAACCACCATCCAAACCACCGTGATGGAACCAAACACTGCTCAACGCTCTCCAATCAATATGAATGTTCCTTCATCCTTGAATCCACGCCTAAGTGATATAATTCCACATGTGATCTTTGTGAATCCAGGAGAGGACATCATTGAAAAAGTAGCAGCCTATAGCCAGGCAGTAGCAGAACCTGATACTGAGATATGCATTATGTCTGCTCATGGTTTAGTTGGCAGTGTCGCCCTTCATCATTCAGGGAGCATCTTTAATTACGAGGGTCAATTTGAAATTGTATCCTTATTTGGGAATTTAGAAGTTTATGACAACAACAGCGACAATATAAGAATGAGTTACTTCAAGGTGTCTCTAGCAAACACTGATTCACGCCTTTTGGAAGGTGTAGTTGCTGATAAGCTTATTGCAGCATCATTGGTAAAGGTCATAGTGGGCAGCTTTACTTTGGATGGAAAAAATGCTAGCCTGAATAACCTGGAATATGAATTTTCTTCAGCGCCATTGCCTAAACTTGTTAATGATGGAACTCAAACCGATGTGACCACTCAAGGGCATTCATCTCAGTCCTTAGGTGACAAAGAAAATAATCCTTTTAGCCAAGGGACTGCAATATACAATAATACTATCCAACCCATTCCTACTATGTCGATGTACCAGCAGCTATGGGCTCACCAAACTCAGTAG 774 0.4109 MDLHEIPNSPHPHHDQFEIVILVGPDPFTTTIQTTVMEPNTAQRSPINMNVPSSLNPRLSDIIPHVIFVNPGEDIIEKVAAYSQAVAEPDTEICIMSAHGLVGSVALHHSGSIFNYEGQFEIVSLFGNLEVYDNNSDNIRMSYFKVSLANTDSRLLEGVVADKLIAASLVKVIVGSFTLDGKNASLNNLEYEFSSAPLPKLVNDGTQTDVTTQGHSSQSLGDKENNPFSQGTAIYNNTIQPIPTMSMYQQLWAHQTQ* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0561 257 SUPERFAMILY AF0104/ALDC/Ptd012-like 62 178 - -
Mtr3g0561 257 Pfam Plants and Prokaryotes Conserved (PCC) domain 64 178 IPR005175 -
Mtr3g0561 257 ProSiteProfiles PPC domain profile profile. 59 199 IPR005175 -
Mtr3g0561 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 61 257 IPR039605 GO:0003680
Mtr3g0561 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 61 257 - -
Mtr3g0561 257 CDD DUF296 64 177 IPR005175 -
Mtr3g0561 257 Gene3D - 64 192 - -
Mtr3g0561 257 MobiDBLite consensus disorder prediction 204 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0561 Mtr-Chr3 7412562 7414560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0561 61 239 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 35.789 2.05e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0561 - - mtr:MTR_3g023560 517.309