Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0540 ATGGCAGAGTTGGTAGCTGGGGCATTTCTTCAGTCTTCTTTTCAAGTGATTATTGAGAAGTTGGCTTCTGTTGGTATCAGAGACTACTTTAGTAGTAACAATGTTGATGACCTTGTGAAAGAACTTCATTCTGCACTTGACTCTATCAACCTAGTACTGGACGAAGCAGAGATAAAGCAGTACCAAAAGAAATATGTGAATGTGAAGAAGTGGCTTGATGAACTTAAACATGTTGTCTATGAGGCAGACCAACTGTTAGATGAGATTTCTACTGATGCAATGCTAAATAAGCTGAAAGCTGAATCTGAACCACTTACCACCAATTTATTGGGCTTGGTTTCAGCTTTAACTACAAATCCATTTGAATGTAGGCTCAATGAACAGCTCGATAAACTAGAACTTCTTGCAAAGAAAAAGAAAGAGTTGGGATTGGGAGAAAGTCCTTGCGCTAGTAATGAAGGCTTAGTCAGTTGGAAACCTTCAAAAAGATTGTCATCTACAGCTCTCATGGATGAGTCAACCATATATGGTAGAGATGATGATAAGGACAAGTTAATCAAGTTTTTACTTGCAGGCAATGACAGTGGCAACCAGGTTCCAATAATCAGCATAGTGGGTTTAGGAGGGATGGGGAAAACCACCCTTGCTAAGCTTGTGTACAATGACAACAAGATAGAGGAGCATTTTGACCTTAAAACATGGGTCTACGTTTCAGAATCTTTTGATGTTGTTGGACTCACCAAAGCAATTCTCAAGTCATTTAATTCTTCAGCAGATGGTGAAGACTTGAATCTACTCCAACATCAACTCCAACACATGTTAATGGGAAAGAAATACTTGCTTGTTTTAGATGATATCTGGAACGGGGATGCAGAATGTTGGGAGCTGTTACTTCTTCCCTTTAACCATGGATCTTCTGGAAGTAAGATTATCGTGACAACTCGTGAAAAGGAGGCAGCATATCATGTTTTAAAATCCACCGAGTTATTTGATTTACAACAATTGAAAACAAGCCATTGTTGGAGTTTATTTGAGACACATGCTTTTCAAGGCATGCGTGTGTGTGACGATCCAAAACTTGAATCAATTGGGAGGAAAATAGTGGACAAGTGTGGAGGGTTGCCTTTAGCTATAAAATCACTGGGCCAACTTTTGCGAAAAAAGTTTTCTCAAGATGAATGGATGCAGATATTGGAGACTGATATGTGGCGATTATTAGACGGGGACAACAAAATTAATCCAGTGCTGAGATTGAGTTACCACAATCTTCCTTCCAATCGGAAGCGTTGTTTTGCCTATTGCTCCATTTTTCCCAAGGGTTATACATTTGAAAAAGATGAATTGATCAAGCTTTGGATGGCAGAAGGTTTGTTGAAGTGTTGCAGAAGAGACAAAAGTGAAGAAGAGTTAGGTAATGAAATTTTCAGTGATCTTGAGTCAATTTCGTTTTTCCAAATATCACATAGGAAGGCCTATTCCATGCATGATCTTGTCAATGATTTATCCAAATCAGTGTCAGGAGAATTTTGTAAGCAAATAAAAGGTGCTATGGTGGAAGGTAGCCTTGAAATGACGCGTCATATTTGGTTCTCTCTTCAATTAAATTGGGTTGATAAATCACTAGAGCCATATTTGGTTCTCTCTTCAATTAAGGGACTACGCAGTCTGATACTACAAGGCTCGTATGGTGTGTCGATAAGCAAAAATGTGCAACGTGATCTGTTTTCAGGACTTCAATTTCTACGGATGTTAAAAATTAGAGATTGTGGTCTCTCAGAGCTAGTTGATGAGATAAGCAATTTAAAGCTTTTGCGTTATCTAGACCTTTCTCACACTAATATTACAAGGTTACCCGATTCTATTTGTATGTTGTATAATTTGCAAACACTCTTATTGCAAGGCTGTAGGAAGTTGACAGAGCTCCCTTCAAATTTCTCAAAACTCGTCAATTTACGTCATCTTGAACTTCCTAGTATAAAGAAGATGCCAAAGCATATAGGAAATCTAAACAATCTTCAGGCCTTACCTTATTTTATTGTGGAAGAGCAGAATGAGTCTGATCTTAAGGAGTTGGGGAAACTAAACCATCTTCATGGAACAATTGATATTAAAGGGTTGGGTAATGTGATTGATCCTGCAGATGCTGCGACAGCCAATTTAAAAGATAAGAAGCATTTAGAAGAATTACATTTGACGTTTAATGGTACAAGAGAAGAAATGGATGGCTCAAAAGTTGAATGCAATGTATCTGTCTTTGAGGCTCTTCAACCAAAGAGCAACTTGAAGAAGCTCACCATCACATACTACAATGGCAGTAGCTTTCCAAATTGGCTAAGTGGTTTTCATTTATCAAACTTAGTATCTCTTAAACTGAAGGACTGTGTACTATGTTCCCATTTACCAATGCTTGGGCAGTTCCCCTCTCTCAAGGAGATTTCTATTTCAAACTGTAACGGAATAAAGATCATCGGCGAAGAGTTTTACAACAATAGTACAACAAATGTTCCGTTCAGGTCCCTTGAAGTTTTGAAATTGGAGCATATGGTCAATTGGGAGGAATGGTTTTGTCCTGAAAGGTTTCCTTTGCTTAAAGAGCTTACTATAAGAAATTGTCCCAAATTGAAAAGGGCCTTGCTGCCTCAACACCTTCCTTCTTTACAAAAATTGCAACTTTGTGTTTGTAAACAGTTGGAGGTATCAGTTCCCAAGAGTGATAATATGATAGAGTTAGATATACAGAGATGTGATAGAATTTTGGTAAATGAATTGCCGACAAATTTGAAAAGGTTATTACTTTGTGATAATCAGTACACCGAGTTCTCCGTGGACCAAAATCTAATCAATATTCTCTTTCTTGAAAAGTTGAGGTTGGATTTCAGAGGCTGTGTAAACTGTCCCTCTTTGGATTTACGTTGCTATAATTATCTTGAAAGACTTTCAATAAAAGGATGGCATTCCTCCTCCTTGCCTTTTTCACTACACTTGTTCACCAAACTTCATTATCTGTATCTGTACGATTGTCCAGAGCTGGAATCCTTTCCAATGGGTGGTTTGCCTTCCAACTTGAGGGAACTTGTAATATACAATTGCCCAAAACTGATTGGTTCAAGAGAGGAGTGGGGTTTGTTCCAACTCAATTCTCTCATTGAATTCGTTGTTAGTGATGAGTTTGAAAACGTGGAGTCGTTCCCAGAGGAGAATCTGCTGCCACCAACTCTGGAGTATCTTAATTTGCATAATTGTTCAAAGCTAAGAATAATGAACAAAAAGGGTTTTCTCCACCTCAAATCTCTCAAATATCTATATATTATCAACTGCCCTAGTCTTGAGAGCTTGCCAGAGAAGGAGGATCTACCCAACTCCCTTTATACTTTGCGGATTGAAGAATGTGGAATAATAAAGGAGAAGTATGAAAAGGAGGGAGGAGAGCGTTGGCATACAATTTGTCACATCCCTATGGTGACAATTGACCTCATTGAACAGGAATGA 3489 0.3832 MAELVAGAFLQSSFQVIIEKLASVGIRDYFSSNNVDDLVKELHSALDSINLVLDEAEIKQYQKKYVNVKKWLDELKHVVYEADQLLDEISTDAMLNKLKAESEPLTTNLLGLVSALTTNPFECRLNEQLDKLELLAKKKKELGLGESPCASNEGLVSWKPSKRLSSTALMDESTIYGRDDDKDKLIKFLLAGNDSGNQVPIISIVGLGGMGKTTLAKLVYNDNKIEEHFDLKTWVYVSESFDVVGLTKAILKSFNSSADGEDLNLLQHQLQHMLMGKKYLLVLDDIWNGDAECWELLLLPFNHGSSGSKIIVTTREKEAAYHVLKSTELFDLQQLKTSHCWSLFETHAFQGMRVCDDPKLESIGRKIVDKCGGLPLAIKSLGQLLRKKFSQDEWMQILETDMWRLLDGDNKINPVLRLSYHNLPSNRKRCFAYCSIFPKGYTFEKDELIKLWMAEGLLKCCRRDKSEEELGNEIFSDLESISFFQISHRKAYSMHDLVNDLSKSVSGEFCKQIKGAMVEGSLEMTRHIWFSLQLNWVDKSLEPYLVLSSIKGLRSLILQGSYGVSISKNVQRDLFSGLQFLRMLKIRDCGLSELVDEISNLKLLRYLDLSHTNITRLPDSICMLYNLQTLLLQGCRKLTELPSNFSKLVNLRHLELPSIKKMPKHIGNLNNLQALPYFIVEEQNESDLKELGKLNHLHGTIDIKGLGNVIDPADAATANLKDKKHLEELHLTFNGTREEMDGSKVECNVSVFEALQPKSNLKKLTITYYNGSSFPNWLSGFHLSNLVSLKLKDCVLCSHLPMLGQFPSLKEISISNCNGIKIIGEEFYNNSTTNVPFRSLEVLKLEHMVNWEEWFCPERFPLLKELTIRNCPKLKRALLPQHLPSLQKLQLCVCKQLEVSVPKSDNMIELDIQRCDRILVNELPTNLKRLLLCDNQYTEFSVDQNLINILFLEKLRLDFRGCVNCPSLDLRCYNYLERLSIKGWHSSSLPFSLHLFTKLHYLYLYDCPELESFPMGGLPSNLRELVIYNCPKLIGSREEWGLFQLNSLIEFVVSDEFENVESFPEENLLPPTLEYLNLHNCSKLRIMNKKGFLHLKSLKYLYIINCPSLESLPEKEDLPNSLYTLRIEECGIIKEKYEKEGGERWHTICHIPMVTIDLIEQE* 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0540 1162 ProSiteProfiles Leucine-rich repeat profile. 603 624 IPR001611 GO:0005515
Mtr3g0540 1162 Gene3D Ribonuclease Inhibitor 542 917 IPR032675 -
Mtr3g0540 1162 PANTHER OS05G0414200 PROTEIN 37 881 - -
Mtr3g0540 1162 SUPERFAMILY L domain-like 907 1133 - -
Mtr3g0540 1162 Gene3D - 159 330 IPR027417 -
Mtr3g0540 1162 Pfam Rx N-terminal domain 16 97 IPR041118 -
Mtr3g0540 1162 PRINTS Disease resistance protein signature 201 216 - -
Mtr3g0540 1162 PRINTS Disease resistance protein signature 273 287 - -
Mtr3g0540 1162 PRINTS Disease resistance protein signature 371 385 - -
Mtr3g0540 1162 PRINTS Disease resistance protein signature 599 615 - -
Mtr3g0540 1162 Gene3D - 420 505 IPR036388 -
Mtr3g0540 1162 Gene3D Ribonuclease Inhibitor 920 1141 IPR032675 -
Mtr3g0540 1162 Gene3D - 14 119 - -
Mtr3g0540 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 434 IPR027417 -
Mtr3g0540 1162 PANTHER DISEASE RESISTANCE PROTEIN RP 37 881 IPR044974 GO:0006952
Mtr3g0540 1162 Gene3D - 334 419 IPR042197 -
Mtr3g0540 1162 Pfam NB-ARC domain 179 400 IPR002182 GO:0043531
Mtr3g0540 1162 SUPERFAMILY L domain-like 494 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0540 Mtr-Chr3 7194310 7205475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0540 202 514 WRKY Transcription Factor Family AT5G45050 22.741 3.44e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0540 - - mtr:MTR_3g023030 2168.66