Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0539 ATGGCCGAGGTAAAGCAGTACCAAAACCGAGACGTGAAGAATTGGCTTGATGATCTCAAACACGAGGTATATGAAGTAGACCAACTTCTAGATGTGATTTCTACTGACGCACAACCAAAGGGCAGGATGCAACACTTTCTTTCACTTTTTAGTAATCGAGGATTTGAGGCTAGGATTGAAGCATTGATACAGAAGGTAGAGTTTCTTGCAGAGAAACAGGATAGATTGGGACTTCAAGCAAGTAATAAAGATGGAGTCACTCCGCAGATATTTCCAAATGCATTTTGGGTGGATGATGATTGTACCATATATGGTAGAGAGCATGAGAAAGAGGAAATAATTGAATTTTTACTATCAGACAGTGACAGTGATGCTGACAACCGGGTACCCATAATCAGTATAGTTGGTCTTATTGGGATAGGTAATACGACCCTTGCGCAACTTGTTTACAATGATCATAAGATGATGGAGCATGTGGAACTTAAAGCTTGGGTCCATGATTCAGAATCTTTTGATCTTGTTGGTCTCACCAAATCAATTCTCAGGTCATTTTGTTCTCCACCAAAAAGTAAAAACTTGGAAATACTCCAACGTCAATTGTTACTGTTGCTAATGGGCAAGAAATATTTGCTTGTTCTTGACTGTGTTTATAAAAGGAACGGAGAATTTTTGGAGCAGTTACTGTTTCCTTTTAACCATGGATCTTCTCAAGGCAAGATAATCTTGACAACATATGACAAGGAAGTAGCATCAATCATGAGATCCACCCGGCTACTTGATTTAAAGCAATTAGAAGAGAGTGGTTGTAGGAGTTTATTTGTGAGTCATGCTTTTCATGATAGGAATGCGAGTCAACATCCAAATCTTGAAATTATTGGCAAGAAAATAGTAGACAAATGTGGAGGGTTGCCTTTAACTGTGACAGAAATGGGTAATCTCTTGCGTAGAAGATTCTCTAAACGTGAGTGGGTTAAGATAATGGAGACTGATTTGTGGTGTTTAGCAGAAGTTGGATTTAACATGATCCCGATACTGAGAATGAGTTACCTTAATCTCTCTTCAAATCTGAAGCATTGTTTTGCTTACTGTTCCATATTTCCCAAGGGCTATGAGTTTGAGAAGGGTGAATTAATCAAGCTTTGGATGGCAGAAGGTTTGCTGAAGTGTTGTGGAAGAGACAAAAGTGAAGAAGAGTTGGGTAATGAATTTTTCAATGATCTAGTGTCAATATCATTTTTCCAACGATCAGTAATTATGCCACGATGGGCAGGTAAGCACTACTTTGTCATGCATGATCTTGTCAATGATTTAGCAAAATCAGTGTCGGGAGAATTCCGCTTCCGAATAGAGAGTGAAAACGTGCAAGATATCCCTAAAAGGACACGTCATATTTGGTGCTGCCTTGATTTGGAAGATGGTGATAGAAAACTAAAGCAGATTCATAAAATTAAAGGACTACACAGTCTGATGGTAGAAGCACAAGGCTATGGTGACAAACGCTATAAGATAGGCATCGATGTGCAACGTAATTTGTATTCAAGACTACAATATTTGCGGATGTTATCTTTCCATGGTTGCAGTCTCTCGGAGCTAGCAGATGAGATAAGAAATTTAAAGCTTCTGCGCTATCTAGATCTTTCGTACACTGAGATTACAAGCTTACCGATTTCCGTTTGTATGATATATAATTTACAGACACTCTTATTGGAAGAATGTTGGAAATTGACTGAGCTCCCTTTAGATTTTGGCAAACTCGTCAACTTACGCCATCTTAATCTGAAAGGCACTCATATTAAGAAGATGCCAACAAAAATAGGAGGGTTAAACAATCTTGAGATGCTGACTGATTTTGTTGTGGGGGAGAAGTGTGGATCTGATATTAAGCAGTTGGCGGAACTCAATTATATTCAAGGAAGGCTCCAAATTTCAGGGTTGAAAAATGTCATTGATCCTGCAGATGCTGTGGCAGCAAATTTGAAAGATAAGAAACATTTAGAAGAACTAAGTTTGTCATATGATGAATGGAGAGATATGAATCTGTCAGTAACTGAAGCACAAATCTCTATCTTGGAGGCTCTTCAACCAAATAGAAATCTCATGAGGCTCACCATCAAAGACTATGGAGGCAGTAGCTTTCCATATTGGCTTGGAGATTATCATTTACCAAATTTAGTATCTCTTGAATTGTTGGGATGTAAACTCCGTTCCCAGTTGCCGCCACTTGGGCAGTTCCCCTCTCTCAAGAAGCTTTTTATTTCAGGCTGTGATGGAATAGAAATCATTGGTACAGAGTTCTATGGCTACAATTCATCAAATGTTTCATTTAAATCCCTTGAAACTTTGCGATTTGAGCACATGTCCGAATGGAAGGAATGGTTATGTCTTGAATGTTTCCCTTTGCTTCAAGAGCTTTGTATAAAACATTGTCCCAAGTTGAAAAGTTCCCTGCCTCAACACCTTCCTTCTTTGCAAAAATTGGAGATTATTGATTGCCAAGAGTTGGCGGCTTCAATTCCGATGGCTGCTAATATCAGTGAGCTAGAACTAAAGAGATGTGATGACATATTGATAAATGAGTTGCCAGCTACCTTGAAAAGAGTCATCCTTTGTGGAACTCAGGTCATTCGATCCTCCCTAGAGCAAATTTTATTTAACTGTGCCATTCTTGAAGAATTGGAAGTTGAAGACTTCTTTGGTCCAAATCTAGAATGGTCCTCTTTGGACATGTGTAGCTGTAATTCTCTTCGTGCTTTAACTATAACAGGTTGGCACTCTTCCTCATTTCCTTTTACACTACAATTGTTCACCAATCTTCATTCTCTCGCGTTGTATGAGTGTCCATGGCTGGAATCATTTTTTGGGAGGCAGTTGCCTTCCAACCTAGGCAGCCTCCGAATAGAAAGATGTCCAAACTTGACGGCTTCTAGAGAGGAGTGGGGTTTGTTCCAACTCAATTCTCTAAAACAATTATGTGTTAGTGATGATTTGAATATCTTGGAGTCCTTTCCAGAGGAGAGTCTGCTGCCATCAACTATTAAATCTCTCGAGTTGACAAATTGTTCCAACCTAAAAATAATAAACTACAAGGGTCTTCTCCACCTCACTTCGCTTGAATCTCTATATATTGAAGATTGCCCTTGTCTTGAACGCTTGCCGGAGGAGGATCTACCCAGCTCCCTTTCTACTTTGTCCATTCATGACTGTCCATTACTTAAGAAATTGTACCAAATGGAGCAAGGAGAGCGTTGGCATAGAATTTGTCACATCCCTTCCGTGACAATTTCTTGA 3288 0.3932 MAEVKQYQNRDVKNWLDDLKHEVYEVDQLLDVISTDAQPKGRMQHFLSLFSNRGFEARIEALIQKVEFLAEKQDRLGLQASNKDGVTPQIFPNAFWVDDDCTIYGREHEKEEIIEFLLSDSDSDADNRVPIISIVGLIGIGNTTLAQLVYNDHKMMEHVELKAWVHDSESFDLVGLTKSILRSFCSPPKSKNLEILQRQLLLLLMGKKYLLVLDCVYKRNGEFLEQLLFPFNHGSSQGKIILTTYDKEVASIMRSTRLLDLKQLEESGCRSLFVSHAFHDRNASQHPNLEIIGKKIVDKCGGLPLTVTEMGNLLRRRFSKREWVKIMETDLWCLAEVGFNMIPILRMSYLNLSSNLKHCFAYCSIFPKGYEFEKGELIKLWMAEGLLKCCGRDKSEEELGNEFFNDLVSISFFQRSVIMPRWAGKHYFVMHDLVNDLAKSVSGEFRFRIESENVQDIPKRTRHIWCCLDLEDGDRKLKQIHKIKGLHSLMVEAQGYGDKRYKIGIDVQRNLYSRLQYLRMLSFHGCSLSELADEIRNLKLLRYLDLSYTEITSLPISVCMIYNLQTLLLEECWKLTELPLDFGKLVNLRHLNLKGTHIKKMPTKIGGLNNLEMLTDFVVGEKCGSDIKQLAELNYIQGRLQISGLKNVIDPADAVAANLKDKKHLEELSLSYDEWRDMNLSVTEAQISILEALQPNRNLMRLTIKDYGGSSFPYWLGDYHLPNLVSLELLGCKLRSQLPPLGQFPSLKKLFISGCDGIEIIGTEFYGYNSSNVSFKSLETLRFEHMSEWKEWLCLECFPLLQELCIKHCPKLKSSLPQHLPSLQKLEIIDCQELAASIPMAANISELELKRCDDILINELPATLKRVILCGTQVIRSSLEQILFNCAILEELEVEDFFGPNLEWSSLDMCSCNSLRALTITGWHSSSFPFTLQLFTNLHSLALYECPWLESFFGRQLPSNLGSLRIERCPNLTASREEWGLFQLNSLKQLCVSDDLNILESFPEESLLPSTIKSLELTNCSNLKIINYKGLLHLTSLESLYIEDCPCLERLPEEDLPSSLSTLSIHDCPLLKKLYQMEQGERWHRICHIPSVTIS* 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0539 1095 Gene3D - 93 259 IPR027417 -
Mtr3g0539 1095 Pfam NB-ARC domain 107 328 IPR002182 GO:0043531
Mtr3g0539 1095 Gene3D - 349 441 IPR036388 -
Mtr3g0539 1095 Coils Coil 52 72 - -
Mtr3g0539 1095 SUPERFAMILY L domain-like 429 832 - -
Mtr3g0539 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 363 IPR027417 -
Mtr3g0539 1095 Gene3D Ribonuclease Inhibitor 478 860 IPR032675 -
Mtr3g0539 1095 PRINTS Disease resistance protein signature 131 146 - -
Mtr3g0539 1095 PRINTS Disease resistance protein signature 203 217 - -
Mtr3g0539 1095 PRINTS Disease resistance protein signature 300 314 - -
Mtr3g0539 1095 PRINTS Disease resistance protein signature 818 834 - -
Mtr3g0539 1095 Gene3D - 263 348 IPR042197 -
Mtr3g0539 1095 Gene3D Ribonuclease Inhibitor 861 1088 IPR032675 -
Mtr3g0539 1095 SUPERFAMILY L domain-like 774 1085 - -
Mtr3g0539 1095 PANTHER OS05G0414200 PROTEIN 8 957 - -
Mtr3g0539 1095 PANTHER DISEASE RESISTANCE PROTEIN RP 8 957 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0539 Mtr-Chr3 7168974 7184296 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0539 132 761 WRKY Transcription Factor Family AT5G45050 23.373 6.49e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0539 - - mtr:MTR_3g021170 1497.26