Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0506 ATGTCAAAGAAGACTAGTTTAGGTAGACAAAAAATCCCTATTGAAAAAATACCCAAAAAAAGCCATTTACAAGTTACTTTCTCTAAACGTCGTTCAGGACTATTCAAAAAAGCTAGTGAACTTTGCACTCTGTGTGGTGTTGAGATTGCGATCGTTGTTTTCTCTCCTGCTGATAAGGCATTCTCTTTTGGTCATCCAGAAGTTGAGTCGATCGTCGATCGTTATTTGACTCGCAATCCTCCACAAGAATCTGGTGCTCACCAACTTGTCGAGGCTCATAGAAATGCTAATGTGCGCGATCTCAACATCCAATTGACTCAACTTCTTAACCATTTGGAGATTGAAAAGAAACAAGGGGAAGAGATTGAGCACATGAGGAAAGCTAGGCAAAGGCAATTTTGGTGGGAGAGCCCTATTGATGAGCTTGGCCTGAATGAATTGGTTCAATTAAAGGGTTCTATTGATGGGCTGAAGAAGAACATTGGAAAATTTGCTAACAAATGCATGATGGAACAATCTAATGCGTCTTCATCAAATATGGGAGCAAGTGGATTTGTACGTTATGATTCCCTTGACAACAAATTTGGGATTAATATTGCTCCCCCACTTCCTAATGCCTATTATCTTGGATTTCGGAATGGGTATCTTTGA 651 0.3978 MSKKTSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIVDRYLTRNPPQESGAHQLVEAHRNANVRDLNIQLTQLLNHLEIEKKQGEEIEHMRKARQRQFWWESPIDELGLNELVQLKGSIDGLKKNIGKFANKCMMEQSNASSSNMGASGFVRYDSLDNKFGINIAPPLPNAYYLGFRNGYL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0506 216 Gene3D - 19 87 IPR036879 GO:0003677|GO:0046983
Mtr3g0506 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Mtr3g0506 216 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Mtr3g0506 216 Gene3D - 88 182 - -
Mtr3g0506 216 SUPERFAMILY SRF-like 8 82 IPR036879 GO:0003677|GO:0046983
Mtr3g0506 216 Coils Coil 98 118 - -
Mtr3g0506 216 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Mtr3g0506 216 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Mtr3g0506 216 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Mtr3g0506 216 PANTHER MADS BOX PROTEIN 6 176 - -
Mtr3g0506 216 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 6 176 - -
Mtr3g0506 216 CDD MADS_MEF2_like 8 77 IPR033896 GO:0000977|GO:0045944
Mtr3g0506 216 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0506 Mtr-Chr3 6610522 6611172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0506 4 183 Type I MADS-box Gene Family AT5G60440 51.366 2.17e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g0506 SRF-TF 3.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0506 - - gmx:100793705 325.865