Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0500 ATGGCTTTCCCTTGTGCTTTTTGTGCTTTTTTAGTTAAGATTAAAATAATGAATATCATGGAAGATGTTTTTCATGGTGGGGCATTTCTTTCCCCTGTGATTCGATTGATTTGTAAGAGTTTAGCTTCAACAGATTTCAGAGACTACTTCGACAAAGGGCTTGTGAATAAACTTGAAACCACACTGAATTTTATCAATCTAGTACTAGATGACGCAGAGACAAAGCAGTACGAGGATCTAGGCGTGAAGTGTTGGCTTGATGATGTGAGTAATGAGGTATACGAATTGGAACAACTATTGGATGTCATTGCTACTGACGCCGCACAACAAAAGGGAAAGATACAACGCTTTCTTTCAGGTTCTATCAATCGATTTGAATCTAGGATTAAAGTATTGCTTAAGAGGCTAGAGTTTCTTGCAATGGAAAAATCTAGATTGGAACTTCAAGAGTTTACTAATTATTTATATGAAGAAAGAGCCAGCGGTTTCGCTACTTCATTCATGGCTGAATCTATCATATATGGTAGAGAACGTGAAAAAGAGGAAATAATCAAATTTTTACTTTCAGACAGTTACAACCGAAACCAGGTATCCATAATCAGTATAGTGGGTCTGACGGGGATGGGTAAGACAGCCCTTGCCCAGCTTGTTTACAATGACCATAGGATACAGGAGCAGTTTGAATTTAAAGCTTGGGTCCATGTTTCTGATGAATCTTTTGATTGTCTTCGTCTCAACAAAGAAATACTCAATCATCAACTGCAAAAATGGCTAGCAGGGAATAAATATTTACTTGTTCTAGATGATGCCTGGATTAAAAATAGGAATATGTTGGAGCGTTTACTACTTCTTTTTAACCAGGGATACATTCGAGGCAAAATGATTGTGACGACAAATGATAAAGAAGTAGCATCAGTCATGAGATCCACCCGGATAATTCATCTAAGGCAATTGGAGGAGAGTGACTCTTGGAATTTATTTGTAAGACATGCTTTTGAAGGCAGGAATATGTTTGAATATCCAAATCTTGAATCGATCGGCAAGAAAATAGTAGAAAAATGTGGGGGGTTGCCTTCAGCTCTGAAAACATTGGGGATTCTCTTGCAAAGAAAGTTCTCTGAAAATGAATGGGTTAAGATATTGGAGACTGATTTGTGGCGTTTACCCAAGGGTGACAACAGCAACATTTATTCCGCTTTGAGAATGAGTTACCTTAGCCTCCCTTCCAATCTGAAGCATTGTTTTGCTTATTGTTCTATATTTCCCAAGGGTTATGAGTTTGAAAAGGGTGAATTAATCAAGCTTTGGATGGCAAAAGGTTTGCTAAAGGGAATAACCAAAAAAGAAGAAGAGTTGGGTAATAAATTCTTCAATGATCTAGTGTCAATGTCTTTTTTCCAACCATCAGCGATTATGCCATTCTGGGCTGGTAAGTACTATTTCATCATGCATGATCTTATCAATGATTTAGCGACATCAATGTCAGGAGAATTCTGCTTACGAATAGAGGGTGTGAAAGTGCAAGATATCCCTCAAAGGACACGTCACATTTGGTGCCGCCTTGATTTGGAAGATGGTGATAGAAAACTAAAGCAGATTCATAACATTAAAGGACTACAGAGTCTGATGGTAGAAGAACAAGGATATGGTGAGAAACGCTTTAAGATATCCACCAATGTGCAGCAGAGTTTGTTTTCAAGACTAAAATATTTGCGGATATTGTCTTTCTCTGGTTGCAATCTCTTAGAGCTAGCTGATGAGATAAGAAACTTAAAGCTTCTGCGCTATCTAGACCTTTCTTACACCGAGATTACAAGTTTACCTGATTCCATTTGTATGTTGTATAATTTGCATACACTCTTACTGGAAGAATGTTTTAAACTGACTGAGCTCCCATCAAATTTTCACAATCTCATCAATTTATGTCATCTTAATTTGAAAGGCACGCATATTAAGAAGATGCCAAAGAAGATAAGAGAATTAATCAATCTTGAGATGCTGACTGATTTTGTTGTGGAAGAGCAACATGGATATGATATTAAGCAGTTGGCAGAACTCAACCACCTTAAAGGAAGGCTTCGAATTTCAGGGTTGAAAAACGTGGCGGATCCAGCAGTTGCTATGGCAGCAAATTTGAAAGAGAAGAAACATTTAGAAGAATTAAGTTTGTCGTATGATGAATGGAGAGAAATGGATGGCTCAGAAACTGAAGCACGTGTATCGGTCTTGGAGGCTCTTCAACCTAATAGAAACCTCATGAGGCTCACCATCAATGACTACAGAGGTAGTAGCTTTCCAAATTGGCTTGGGGATCTTAATCTACCAAATTTAGTATCTCTTGAATTAGTGGGATGTAAACATTGTTCCCAGTTGCCACCACTTGGGAAGTTCCCTTCTCTCAAGAAGCTTTCCATTTCAGGCTGTCATGGAATAAAGATCATTGGTTCAGAGTTTTGCGGCTATAATTCATCAAATGTTGCATTTAGATCCCTTGAAACTTTGCGGGTTGAGTATATGTCTGAATGGAAGGAATGGTTATGCCTTGAAGGTTTCCCTCTGCTTCAAGAGCTTTGTCTAAAACAATGTCCCAAGTTGAAAAGTGCCCTGCCTCATCATCTTCCTTGTTTGCAAAAGTTGGAGATTATTGATTGCGAAGAGTTGGAGGCTTTAATTCCAAAGGCTGCTAATATCAGTGATATAGAACTAAAGAGATGTGATGGCATTTTGATAAATGAATTGCCATCAAGCTTGAAAACGGCCATCCTTTGTGGCACTCACGTCATTGAATCCACCCTAGAGAAAGTTCTAATTAATAGTGCCTTTCTTGAAGAGTTGGAAGTTGAAGACTTCTTTGGTCGAAATATGGAATGGTCCTCTTTGCATGTGTGTAGCTGTTATTCCCTTTGCACTCTAACTATAACAGGTTGGCACTCTTCTTCCTTGCCTTTTGCACTACACTTGTTCACCAATCTTAATTCTCTCGTGTTGTACGATTGTCCATGGCTGGAATCGTTTTTTGGGAGGCAGTTGCCTTGCAACCTAGGCAGCCTCCGGATAGAAAGATGCCCTAATTTGATGGCTTCAATAGAGGAGTGGGGTTTGTTCCAACTCAAATCTCTGAAACAATTCACTCTTAGTGACGATTTTGAAATCTTCGAATCCTTTCCAGAGGAGAGTATGCTGCCATCAACTATTAACTCTCTTGAGTTGACAAATTGTTCAAACCTAACAAAAATAAACTACAAGGGTCTTCTCCACCTCACTTCACTTGAATCTCTATATATTGAAGATTGTCCTTGTCTTGATAGCTTGCCAGAGGAGGGTCTACCCAGCTCCCTTTCTACTTTGTCGATTCATGATTGTCCATTAATTAAGCAGCTGTACCAAAAGGAGCAAGGCGAGCATTGGCATACAATTTCTCACATCCCTTATGTGATAATTTCCTGA 3447 0.3885 MAFPCAFCAFLVKIKIMNIMEDVFHGGAFLSPVIRLICKSLASTDFRDYFDKGLVNKLETTLNFINLVLDDAETKQYEDLGVKCWLDDVSNEVYELEQLLDVIATDAAQQKGKIQRFLSGSINRFESRIKVLLKRLEFLAMEKSRLELQEFTNYLYEERASGFATSFMAESIIYGREREKEEIIKFLLSDSYNRNQVSIISIVGLTGMGKTALAQLVYNDHRIQEQFEFKAWVHVSDESFDCLRLNKEILNHQLQKWLAGNKYLLVLDDAWIKNRNMLERLLLLFNQGYIRGKMIVTTNDKEVASVMRSTRIIHLRQLEESDSWNLFVRHAFEGRNMFEYPNLESIGKKIVEKCGGLPSALKTLGILLQRKFSENEWVKILETDLWRLPKGDNSNIYSALRMSYLSLPSNLKHCFAYCSIFPKGYEFEKGELIKLWMAKGLLKGITKKEEELGNKFFNDLVSMSFFQPSAIMPFWAGKYYFIMHDLINDLATSMSGEFCLRIEGVKVQDIPQRTRHIWCRLDLEDGDRKLKQIHNIKGLQSLMVEEQGYGEKRFKISTNVQQSLFSRLKYLRILSFSGCNLLELADEIRNLKLLRYLDLSYTEITSLPDSICMLYNLHTLLLEECFKLTELPSNFHNLINLCHLNLKGTHIKKMPKKIRELINLEMLTDFVVEEQHGYDIKQLAELNHLKGRLRISGLKNVADPAVAMAANLKEKKHLEELSLSYDEWREMDGSETEARVSVLEALQPNRNLMRLTINDYRGSSFPNWLGDLNLPNLVSLELVGCKHCSQLPPLGKFPSLKKLSISGCHGIKIIGSEFCGYNSSNVAFRSLETLRVEYMSEWKEWLCLEGFPLLQELCLKQCPKLKSALPHHLPCLQKLEIIDCEELEALIPKAANISDIELKRCDGILINELPSSLKTAILCGTHVIESTLEKVLINSAFLEELEVEDFFGRNMEWSSLHVCSCYSLCTLTITGWHSSSLPFALHLFTNLNSLVLYDCPWLESFFGRQLPCNLGSLRIERCPNLMASIEEWGLFQLKSLKQFTLSDDFEIFESFPEESMLPSTINSLELTNCSNLTKINYKGLLHLTSLESLYIEDCPCLDSLPEEGLPSSLSTLSIHDCPLIKQLYQKEQGEHWHTISHIPYVIIS* 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0500 1148 Pfam Rx N-terminal domain 30 114 IPR041118 -
Mtr3g0500 1148 Gene3D - 317 402 IPR042197 -
Mtr3g0500 1148 Gene3D - 403 494 IPR036388 -
Mtr3g0500 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 418 IPR027417 -
Mtr3g0500 1148 Gene3D - 51 137 - -
Mtr3g0500 1148 SUPERFAMILY L domain-like 483 887 - -
Mtr3g0500 1148 Coils Coil 122 149 - -
Mtr3g0500 1148 Pfam NB-ARC domain 177 383 IPR002182 GO:0043531
Mtr3g0500 1148 PRINTS Disease resistance protein signature 199 214 - -
Mtr3g0500 1148 PRINTS Disease resistance protein signature 257 271 - -
Mtr3g0500 1148 PRINTS Disease resistance protein signature 354 368 - -
Mtr3g0500 1148 PRINTS Disease resistance protein signature 589 605 - -
Mtr3g0500 1148 Coils Coil 55 75 - -
Mtr3g0500 1148 SUPERFAMILY RNI-like 914 1132 - -
Mtr3g0500 1148 Gene3D Ribonuclease Inhibitor 527 919 IPR032675 -
Mtr3g0500 1148 Gene3D - 166 314 IPR027417 -
Mtr3g0500 1148 PANTHER OS05G0414200 PROTEIN 46 907 - -
Mtr3g0500 1148 CDD AAA 174 302 - -
Mtr3g0500 1148 Gene3D Ribonuclease Inhibitor 963 1137 IPR032675 -
Mtr3g0500 1148 ProSiteProfiles Leucine-rich repeat profile. 593 614 IPR001611 GO:0005515
Mtr3g0500 1148 PANTHER DISEASE RESISTANCE PROTEIN RP 46 907 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0500 Mtr-Chr3 6545460 6552939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0500 197 814 WRKY Transcription Factor Family AT5G45050 23.225 1.95e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0500 - - mtr:MTR_3g021170 1777.3