Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0477 ATGGCACTACCTTCTCTGTCTTCCTTCACTTGTGACTGGACTTATGATGTTTTCCTCAATTTTAGAGGCAAAGATACCCGAAACAACTTCACTGGTAATCTCTACAACTCTCTACAAAATCAAAGAGGTATACAAACTTTTATGGATGATGAAGAAATTCAAAAAGGAGAAGAAATCACACCTACTCTTCTTCAAGCCATTGAAGAATCTAGGATTTTCATTGCTATTTTCTCACCTAACTATGCATCTTCAACGTTTTGTTTGACTGAACTTGTCACCATCCTTGAGTGCTCCATGTCACAAGGAAGGTTATTTTCGCCGGTGTTTTATGATGTGGATCCATCTCAAATTCGATACCTGACTGGAACTTATGCCGAGGCTTTCAAAAAACACGAGGAGAGGTTTGGAGATGACAAGCATAAGATGCAGAAATGGAGAGATGCTTTACATCAAGCTGCTAATATGTCTGGATGGCATTTCAAACCAGGGTATGAATTAGAATATAAATTTATTGAAAAGATAGTTAAAGCAGTCTCTGTAAAGATCAACCGCATTCCTTTACATGTTGCAAAGAACCCTGTTGGCTTGGAGTCTCAAATATTAGAAGTGATATCTCTCCTTGGACTTGACTCGAATGAGAAAGTCAACATGGTAGGCATTTATGGAATCGGCGGAATAGGCAAATCAACAACTGCTCGTGCTGTGCATAACTTGATTGCTGATCAGTTTGAAGGTGTGTGTTTTCTCGATGACTTAAGAAAGAGGGAAATTAATCATGATCTTGCACGGCTCCAAGAAGCACTACTTTCTGATATATTGGGGGAGAAGGATATTAAAGTAGGAGATGTTTACAGAGGAATGTCGATAATTAAAAGGAGGCTTCAAAGAAAGAAAGTCCTTTTGATTCTTGATAATGTCGACAAAGGTAAGCAGTTACAGGCATTTGTAGGAGGAGATGATTGGTATGGCTCCGGAAGCAAGATCATAGTCACTACAAGAGACAAGCATTTGTTGGCCAGTAATGGGATTGTGAAAGTATATGAGGTTAAACAGCTAAAAAATGAAAAGGCCCTGGAGTTGTTTAGTTGGCATGCATTTAAAAATAAAAAAAATTATCCAGGTCATCTGGATATCGCAAAACGTGCAGTATCTTATTGTCAGGGTCTTCCCTTGGCTTTGGAGGTAATAGGATCTCAATTGTTTGGAAAAAGTTTAGCTGTATGGAAATCCTCATTAGACAAATATGAAAGAGTCCTTCTAAAGATATCCATGAAATTCTGA 1281 0.3825 MALPSLSSFTCDWTYDVFLNFRGKDTRNNFTGNLYNSLQNQRGIQTFMDDEEIQKGEEITPTLLQAIEESRIFIAIFSPNYASSTFCLTELVTILECSMSQGRLFSPVFYDVDPSQIRYLTGTYAEAFKKHEERFGDDKHKMQKWRDALHQAANMSGWHFKPGYELEYKFIEKIVKAVSVKINRIPLHVAKNPVGLESQILEVISLLGLDSNEKVNMVGIYGIGGIGKSTTARAVHNLIADQFEGVCFLDDLRKREINHDLARLQEALLSDILGEKDIKVGDVYRGMSIIKRRLQRKKVLLILDNVDKGKQLQAFVGGDDWYGSGSKIIVTTRDKHLLASNGIVKVYEVKQLKNEKALELFSWHAFKNKKNYPGHLDIAKRAVSYCQGLPLALEVIGSQLFGKSLAVWKSSLDKYERVLLKISMKF* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0477 426 ProSiteProfiles TIR domain profile. 13 182 IPR000157 GO:0007165
Mtr3g0477 426 Gene3D - 11 183 IPR035897 -
Mtr3g0477 426 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 17 418 - -
Mtr3g0477 426 SMART till_3 14 155 IPR000157 GO:0007165
Mtr3g0477 426 Pfam TIR domain 15 182 IPR000157 GO:0007165
Mtr3g0477 426 Gene3D - 184 346 IPR027417 -
Mtr3g0477 426 Gene3D - 351 425 IPR042197 -
Mtr3g0477 426 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 418 IPR044974 GO:0006952
Mtr3g0477 426 SMART AAA_5 214 352 IPR003593 -
Mtr3g0477 426 PRINTS Disease resistance protein signature 217 232 - -
Mtr3g0477 426 PRINTS Disease resistance protein signature 293 307 - -
Mtr3g0477 426 PRINTS Disease resistance protein signature 386 400 - -
Mtr3g0477 426 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Mtr3g0477 426 Pfam NB-ARC domain 209 418 IPR002182 GO:0043531
Mtr3g0477 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 419 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0477 Mtr-Chr3 6214533 6217011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0477 9 361 WRKY Transcription Factor Family AT4G12020 29.526 2.11e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0477 - - mtr:MTR_3g020510 792.341