Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0476 ATGGCAGTGACACTTCCTTCTTTAGCTTCCTTCACATGTGAATGGACTTATGATGTCTTTCTCAGTTTTAGAGGCATTGACACAAGAAACAACTTCACTGGTAACCTCTACAATTCTCTCAATCAAAGAGGTATACGAACATTCTTTGATGATGAAGAAATACAAAAAGGAGAAGAAATTACACCTACTCTTCTTCAAGCCATCAAAGAATCCAGAATTTTCATTGTTGTTTTTTCCACTAACTATGCATCTTCAACTTTCTGTTTGACTGAACTTGTTACTATTCTTGGGTGTTCCAAATCACAAGGACGGATATTTTTACCGATTTTTTATGATGTAGATCCATCCCAAATTCGAAACCTAACCGGAACTTATGCTGAAGCTTTTGCAAAACATGAGATGAGGTTTGGAGATGAGGAAGATAAGGTGCAGAAATGGAGGGATGCTTTACGTCAAGCTGCTAATATGTCTGGATGGCATTTCAAACCGGGGTCTGAATCAGAATATAAGTTTATTGGAAAGATAGTTGAAGAGGTTTCTATAAAGAGCAGCTGTATTCCTTTCCATGTTGCTAACTACCCAGTTGGGTTGGAGTCTCGGATGTTAGAAGTGACATCTCTACTAGGACTTGGGTCTGATGAGAGAACAAACATGGTAGGCATTTATGGAATCGGCGGAATAGGCAAATCAACAACTGCTCGTGCTGTGCATAACTTGATCGCTGACCAATTTGAAAGTGTGTGTTTTCTTGCTGGCATAAGAGAGAGGGCGATTAATCATGGTCTAGCTCATCTCCAAGAAACACTACTTTCTGAAATACTTGGCGAGAAAGATATTAAAGTGGGAGATGTTTATAGAGGAATTTCAATAATTAAAAGAAGGCTTCAAAGAAAGAAAGTCCTTTTGATTCTTGATGATGTGGACAAAGTGGAGCATTTACGGGCACTTGCAGGAGGACATGATTGGTTTGGACTTGGCACCAAGATAATCATCACTACAAGAGACAAGCATTTGCTGGCAACTCATGGGATTGTGAAAGTGTACAAGGTTAAAGAGCTAAACAATGAAAAGGCTTTTGAATTATTTAGTTGGCATGCATTTAAAAATAAAAAAATTGATCCATGTTATGTGGATATTGCAAAACGCGCAGTATCTTATTGTCATGGTCTTCCCTTGGCTTTGGAGGTGATAGGTTCTCACTTGTTTGGTAAAAGTTTAGATGTATGGAAATCTTTGCTAGATAAATATGAAAGAGTCCTTCGTAAAGACATCCATGAAACTCTTAAAGTTAGCTATGATGATTTGGATGAAGATGAGAAGGGTATTTTTCTAGACATCGCTTGTTTCTTCAATTCTTATAAAATAGGCTATGTCAAAGAAATACTATACTTACATGGTTTTCATGCGGATGATGGCATACAAGTGCTAACTGACAAATCTCTGATTAAAATTGATGCCAATAGTTGTGTGAGAATGCATGACTTGATTCAAGGCATGGGCAGAGAAATTGTGAGGCAGGAATCAACATTAGAGCCTGGAAGACGCAGTAGATTATGGTTTAGTGATGACATTGTTCATGTTTTGGAAGAGAACAAGGGAACTGATACAATTGAAGTCATAATCGCCAACTTGTGCAAAGACAGGAAAGTGAAATGGTGTGGAAAAGCCTTCGGGCAGATGAAGAACTTGAGAATTCTAATAATTAGAAACGCACGATTTTCCAGAGGTCCTCAAATTCTTCCAAATAGTTTGAGAGTGCTTGATTGGAGTGGACATGAATCATCCTCCTTACCATCTGATTTTAATCCCAAAAATCTTGTATTACTTAGCCTGCGTGAAAGTTGCCTTAAACGGTTCAAATTACTCAATGTTTTCGAGACATTGATTTTTCTTGATTTTGAAGACTGCAAGTTCCTAACTGAAATACCTAGCTTATCTAGAGTACCAAATTTGGGGTCATTATGTCTTGATTACTGCACTAATTTATTTAGAATCCATGATTCAGTTGGGTTTCTCGACAAGCTTGTGTTATTAAGCGCTAAAAGATGCATCCAACTACAAAGTTTGGTTCCCTGCATGAACTTGCCATCTCTAGAGACATTAGATCTTACAGGTTGCTCGCGTCTTGAGAGCTTCCCAGAAGTACTAGGAGTGATGGAGAATATAAAAGATGTTTATTTAGATGGGACTAACCTATACCAATTGCCTGTCACAATTGGAAATCTTGTTGGGCTCAAACGTTTGTTCTTGAGGAGCTGCCAAAGGATGATTCAGATACCAAGCTACGTATTGCCAAAAGTTGAGATAGTAATATCGCATCATCGTAGGGCAGTTCGATCATCAAATTATGCAGAAAAAGTGAGTCCAAAAGTGTCTACAAATGCCATGTGTGTTTATAATGAATACGGGAAGTCCTTCCTTAATGTGTATTCTCTTAATGTGAGTTCCAACAATGTCATAGAAGTATGTAGTCCTTCGTGGAATCAAGACGGGCATAAACTCAAAAATATTGGTTATCGTCTCTTTTGTCACCCGATTCATAGTGGGAGAGTAATTATGGATAAGGTTAGAAGCAACAAATCGCCAGTGCAGTTTTGGTTTCGAAAAAAATTCCCCAGAATTGCTCTATGCTGTTTTTGTGAAACTGGAGAGCTGTTACACAACGTGGTGCTGGATTTCAAGTTGAATGTACTCATCAATGGCACTAAGCAACTCTCTACTTCATGTGAATACATATATTATACAAAAAGAAAGATGCACCAAAAGCTTTGTTGTGATCTACAATGCAATAAGGAGGGTATATTCTCAGAGAATGAGTGGAACCATGTGGAGATTTTATGTGAGATTGAACATCACATGCAATGCCATTCTGAAAATGCCGTGGACGACCGCGACTGGAACACTAAGAGGATTCTCAAGTCGTCTGTCATACATGTCTACAGCGAAAGCAATGAGGATGATTTCAATTTAGTTGAGAATCCTGATTTTCCTCTGTCATCTGAACAAAAATTTCAAGAGATGCAAAGAAGACTTAAAAGATTACAATTTATCCAACTCCATTTTAATTTCATTTGA 3075 0.3792 MAVTLPSLASFTCEWTYDVFLSFRGIDTRNNFTGNLYNSLNQRGIRTFFDDEEIQKGEEITPTLLQAIKESRIFIVVFSTNYASSTFCLTELVTILGCSKSQGRIFLPIFYDVDPSQIRNLTGTYAEAFAKHEMRFGDEEDKVQKWRDALRQAANMSGWHFKPGSESEYKFIGKIVEEVSIKSSCIPFHVANYPVGLESRMLEVTSLLGLGSDERTNMVGIYGIGGIGKSTTARAVHNLIADQFESVCFLAGIRERAINHGLAHLQETLLSEILGEKDIKVGDVYRGISIIKRRLQRKKVLLILDDVDKVEHLRALAGGHDWFGLGTKIIITTRDKHLLATHGIVKVYKVKELNNEKAFELFSWHAFKNKKIDPCYVDIAKRAVSYCHGLPLALEVIGSHLFGKSLDVWKSLLDKYERVLRKDIHETLKVSYDDLDEDEKGIFLDIACFFNSYKIGYVKEILYLHGFHADDGIQVLTDKSLIKIDANSCVRMHDLIQGMGREIVRQESTLEPGRRSRLWFSDDIVHVLEENKGTDTIEVIIANLCKDRKVKWCGKAFGQMKNLRILIIRNARFSRGPQILPNSLRVLDWSGHESSSLPSDFNPKNLVLLSLRESCLKRFKLLNVFETLIFLDFEDCKFLTEIPSLSRVPNLGSLCLDYCTNLFRIHDSVGFLDKLVLLSAKRCIQLQSLVPCMNLPSLETLDLTGCSRLESFPEVLGVMENIKDVYLDGTNLYQLPVTIGNLVGLKRLFLRSCQRMIQIPSYVLPKVEIVISHHRRAVRSSNYAEKVSPKVSTNAMCVYNEYGKSFLNVYSLNVSSNNVIEVCSPSWNQDGHKLKNIGYRLFCHPIHSGRVIMDKVRSNKSPVQFWFRKKFPRIALCCFCETGELLHNVVLDFKLNVLINGTKQLSTSCEYIYYTKRKMHQKLCCDLQCNKEGIFSENEWNHVEILCEIEHHMQCHSENAVDDRDWNTKRILKSSVIHVYSESNEDDFNLVENPDFPLSSEQKFQEMQRRLKRLQFIQLHFNFI* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0476 1024 Pfam NB-ARC domain 213 435 IPR002182 GO:0043531
Mtr3g0476 1024 Pfam TIR domain 17 180 IPR000157 GO:0007165
Mtr3g0476 1024 Gene3D - 11 178 IPR035897 -
Mtr3g0476 1024 Gene3D - 352 436 IPR042197 -
Mtr3g0476 1024 SMART till_3 16 156 IPR000157 GO:0007165
Mtr3g0476 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 446 IPR027417 -
Mtr3g0476 1024 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 159 IPR035897 -
Mtr3g0476 1024 PRINTS Disease resistance protein signature 218 233 - -
Mtr3g0476 1024 PRINTS Disease resistance protein signature 294 308 - -
Mtr3g0476 1024 PRINTS Disease resistance protein signature 387 401 - -
Mtr3g0476 1024 PRINTS Disease resistance protein signature 693 709 - -
Mtr3g0476 1024 SUPERFAMILY L domain-like 542 821 - -
Mtr3g0476 1024 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
Mtr3g0476 1024 Gene3D Ribonuclease Inhibitor 516 659 IPR032675 -
Mtr3g0476 1024 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Mtr3g0476 1024 Gene3D - 179 347 IPR027417 -
Mtr3g0476 1024 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 749 - -
Mtr3g0476 1024 Gene3D Ribonuclease Inhibitor 667 784 IPR032675 -
Mtr3g0476 1024 SMART AAA_5 215 353 IPR003593 -
Mtr3g0476 1024 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 749 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0476 Mtr-Chr3 6204723 6210678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0476 11 763 WRKY Transcription Factor Family AT4G12020 32.645 1.61e-92 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0476 - - mtr:MTR_3g020650 1526.15