Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0454 ATGAAGAATAAGGAAAACATGGAAAAGAGAGAATTTTCTGAATTGGTGTCAACAATGAATTTTTTGGCTGATGAAGTTGTTTCGTTTGGTAAGAAAACTGAAATTGAGGTAGATGCTTTTTCTGAGTTTTCCATGTTGGTTGAGAAATTGCCACCGATCTTGAATGAATTGAGTGATAACAGCGTTGTATTGGACAAGCCATCAATTCGAAAATCGTTGGAATCTCTTGAGAATGAGCTACGGCGTGCTAAAGCTTTAACAAAAAGCTCGAATTTGAGACACCCTATTAAGCAAATCGAGGACATGACACATGATATTGGCCGGTCGTTGGGAGTTTTGCTTGTTGCAAGCCTTGAAGTATCTATTGATTTTAGAGAAAAGATTGGTACATTGCAAAGACAGATGATGAATGCAAGATTTGACGGCAGTTCAAGTATGACTTCAAGTCCGAAATCAGAATTTTTCATGAGTGAAACGAGGATGGTTGGTGAAATAGAAGAGGAAATCGTTCATGTTTCTATTGATGATGTGATTTTGCAACTTAAGAATGGTAATGATGAAGAATTTGCAGTTTCACTTATGAGACTAAAGGAGTACATGAGAAGCGGAAAATTGGATGGTGGTTTGATTAACGAGGAAGCAACCATCGCCTTTCTTTTCAAGCGTTTAGTTTCATGTAAGGCAGACAATAGACTATCCATAATTCAATTGCTAAGAAGTATTGCTTTTGGAAATGATGAGAAAAAGGAGAAGATGGTTGAGGTTGAGTTTTTGTCAGCAGTGGTGAAGTCTCTTACAAGGGATTCAGAAGAGAGGAGGGAAGCAGTGGGACTGTTGCTAGACCTCTCTAATCTTCAATCAGTTCGTAGGCGGATCGGAAGAATACAAGGGTGTATCGTTATGTTGGTCGCCATCCTTAATGGTGATGACCCAGTTGCTTCACACGATGCAGCAAAGTTATTGGATATTTTGTCGAGTAATAATCAAAATGCACTTCATATGGCCGAGGCTGGTTACTTTAGGCCACTAGTTCAGTATTTGAAGGAAGGGTCTGACATGAACAAGATCCTAATGGCAACATCACTTTCTAGGTTGGAACTCACTGATCACAGCAAACTTACCCTTGGAGAAGATGGAGCGATCGAGCCCCTTGTGAAAATGTTTATTACCGGGAAACTTGAATCCAAGTTATCATCTTTAAACGCACTACAAAATCTGTCTAGCTTGACTGAAAATGTGCAACGTTTGATTCGATCAGGAATTACAGGATCTTTGCTACAACTTCTTTTCTCTGTTACATCTGTGCTCATGACACTAAGGGAACCTGCATCCGCTATTCTTGCACGAATTGCTCAGTCGGAATCCATACTCGTCAACGAAGATGTTGCGCAACAGATGCTTTCGCTTTTGAATCTTTCAAGCCCTATAATTCAAGGTCATCTATTAGAAGCTCTAAATAGCATGTCTTCTCATCTTGGTGCATCCAAAGTGAGAAGAAAAATGAAAGAAAAAGGTGCACTTCAACTACTCTTACCTTTTCTTAAGGAAAATAACATCAAAATCAGGTGTAAGGTCTTGAATTTGCTATACACACTCTCTAAAGATATGACCGATGAGTTGACCGAATATCTTGATGAAAGTCATATTTTCAACATTGTTAATATCGTCTCGTCATCCACATCAGATAGTGAAAAAGCGGCTGCGGTTGGCATACTGAGTAATCTTCCCGCTAGCGATAAAAAAGTAACCGATATACTCAAGAGGGCAAGTTTGCTCCAGCTTTTGATATCTATTTTGTATTCCAGCAATGCTAGTAAATCGCCATCAACAAACAACTTAATCGAGAATGCTACCGGTGTTATAAACCGCTTCACGAATTCATCTGACAAGAAACTACAACTTGTTTCAGTACAACACGGGGTGATTCCTTTGCTTGTAAAATTGCTCTCAACAAGTTCACCAATCACAAAATCAAGGGCTGCAAACTCTTTAGCACAGCTATCTCAAAATTCACTTTCTCTTAGGAAATGTAGAAAGTCAAGATGGTTATGTGTTCAACCTTCAACAAACGCATATTGTGAAGTTCATGATGGATATTGCTTTGTCAATAGCACATTTTGTTTAGTCAAAGCTGGTGCGGTTTCTCAACTTATCGAAATGTTGGAAGATAAAGAGAAGGAAGCAGTTGAAGCTTCTCTTGTTGCACTTTCAACTCTCTTGCAAGATGAAATTTGGGAAAATGGTGTGAATTTCATTGCGAAATTATCAGGTGTGCAAGCTATTATAAAAAGTCTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCATTATGGATGTTGGAGAAAATATTTAAGGTTGAAGAACATAGAGTGAAATATGGAGAATCTGCTCAAGTGGTTCTTATTGATTTGGCACAAAAAAGTGATTCAAGATTGAAATCAACAGTTGCAAAAGTATTAGCAGAGTTAGAGCTTCTACAAGCTCAATCAAGTTATTTTTGA 2502 0.3829 MKNKENMEKREFSELVSTMNFLADEVVSFGKKTEIEVDAFSEFSMLVEKLPPILNELSDNSVVLDKPSIRKSLESLENELRRAKALTKSSNLRHPIKQIEDMTHDIGRSLGVLLVASLEVSIDFREKIGTLQRQMMNARFDGSSSMTSSPKSEFFMSETRMVGEIEEEIVHVSIDDVILQLKNGNDEEFAVSLMRLKEYMRSGKLDGGLINEEATIAFLFKRLVSCKADNRLSIIQLLRSIAFGNDEKKEKMVEVEFLSAVVKSLTRDSEERREAVGLLLDLSNLQSVRRRIGRIQGCIVMLVAILNGDDPVASHDAAKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATSLSRLELTDHSKLTLGEDGAIEPLVKMFITGKLESKLSSLNALQNLSSLTENVQRLIRSGITGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNSMSSHLGASKVRRKMKEKGALQLLLPFLKENNIKIRCKVLNLLYTLSKDMTDELTEYLDESHIFNIVNIVSSSTSDSEKAAAVGILSNLPASDKKVTDILKRASLLQLLISILYSSNASKSPSTNNLIENATGVINRFTNSSDKKLQLVSVQHGVIPLLVKLLSTSSPITKSRAANSLAQLSQNSLSLRKCRKSRWLCVQPSTNAYCEVHDGYCFVNSTFCLVKAGAVSQLIEMLEDKEKEAVEASLVALSTLLQDEIWENGVNFIAKLSGVQAIIKSLEVGDAKVQEKALWMLEKIFKVEEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQAQSSYF* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0454 833 SMART arm_5 368 408 IPR000225 GO:0005515
Mtr3g0454 833 SMART arm_5 701 741 IPR000225 GO:0005515
Mtr3g0454 833 SMART arm_5 245 284 IPR000225 GO:0005515
Mtr3g0454 833 SMART arm_5 629 669 IPR000225 GO:0005515
Mtr3g0454 833 SMART arm_5 494 534 IPR000225 GO:0005515
Mtr3g0454 833 SMART arm_5 409 452 IPR000225 GO:0005515
Mtr3g0454 833 SMART arm_5 579 626 IPR000225 GO:0005515
Mtr3g0454 833 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 6 833 - -
Mtr3g0454 833 Coils Coil 66 93 - -
Mtr3g0454 833 SUPERFAMILY ARM repeat 365 788 IPR016024 -
Mtr3g0454 833 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 833 - -
Mtr3g0454 833 Gene3D - 206 331 IPR011989 -
Mtr3g0454 833 SUPERFAMILY ARM repeat 174 430 IPR016024 -
Mtr3g0454 833 Gene3D - 494 677 IPR011989 -
Mtr3g0454 833 Gene3D - 334 493 IPR011989 -
Mtr3g0454 833 Gene3D - 698 830 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0454 Mtr-Chr3 5758519 5763143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0454 184 833 U-box Gene Family AT1G20780 27.802 2.56e-45 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0454 K08332 - gmx:100791453 1271.91