Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0420 ATGGAAAACTTTACTCCTCAATCGCTCTCTACAAAGAACGATGCATCGTTTATAGCTTTTCCTGGTGATTCTACCCAATCTAGCACCACGGATCAAAGGATGGCTTACATGCAAAGCCTTGTTATTGAACTCAGCAATCCGGATCTTAGAGAAAATGCTCTCTATGTGCTCTCCAAGAGCACCAAGTTATTTGAGGGACTTGGACCTTTATTATGGAATACTGTTGGTACTATTGCAGTATTTTTACAGGAAATAATTTCAATATATCCTACTCTTTCACCACCGAATCTCTCCCCCTCACAATCAACTCGAGTGTGCCATGTTCTTGCATTACTTCAGTGTGTGGCATCTCATCCTGATACAAGGATCTCATTTCTCAATGCTAATATGCCTTTATATTTATATCCATTTCTTAAAACGACAAGCAAGTTAGCACATTTTGAGAAATTGAGGGTTGCTAGTCTTGGAGTCATTGGTGGCTCGATGAAGGTTAACACCAAAGAAGCCATAGGTTTCTATCTCTCAAGTGAGATAATTTCACTATGCTTGTCAAATATGCAAAACGGCAATGAATTGACAAAAATTGTTGCAACATTTATAATTCTGAAAATTATATTAGACGATGATGGTTTGGCTCGTGTTTGTGCTACAACAGAGAATTTTTTTGGAGTATGTCGAGTTTTGAACATGATGTTGGAAGATCTTGAGAATCCACCCTCACCTCGTTTGTTGAGGCTTTTGATTTCATGTTATTCTCGTTTATCTCAAAATTACAGGGCTAGAGTTGCATTAACAACTTATCTTCCAAACAGGCTCAAAGATGCCAATCTCATCAATTTTTTTCGTGATGATCCAAAAACTATGAGGTTGGTATTGGAGTTACATGAGAATGTTGGGGTGAATTGA 906 0.3786 MENFTPQSLSTKNDASFIAFPGDSTQSSTTDQRMAYMQSLVIELSNPDLRENALYVLSKSTKLFEGLGPLLWNTVGTIAVFLQEIISIYPTLSPPNLSPSQSTRVCHVLALLQCVASHPDTRISFLNANMPLYLYPFLKTTSKLAHFEKLRVASLGVIGGSMKVNTKEAIGFYLSSEIISLCLSNMQNGNELTKIVATFIILKIILDDDGLARVCATTENFFGVCRVLNMMLEDLENPPSPRLLRLLISCYSRLSQNYRARVALTTYLPNRLKDANLINFFRDDPKTMRLVLELHENVGVN* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0420 301 PANTHER UNCHARACTERIZED 24 299 - -
Mtr3g0420 301 Pfam Cell differentiation family, Rcd1-like 40 298 - -
Mtr3g0420 301 PANTHER CELL DIFFERENTIATION, RCD1-LIKE PROTEIN 24 299 - -
Mtr3g0420 301 Gene3D - 29 299 IPR011989 -
Mtr3g0420 301 SUPERFAMILY ARM repeat 45 209 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0420 Mtr-Chr3 5379221 5385318 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Mtr3g0420 Rcd1 8.1e-94 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0420 K12606 - cit:102618037 309.686