Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0404 ATGTCCACCACCACGAACGACCCTTTCTCAAACCACAAACTCTGTGGTTTTCTCTCAACCGTTCTCACAGTAACCCCACAGCATCAAAACGACACGCGTTTTAACGACCGATGCGAATTCTTCAACGACAACAATGCAATCGCGTTTCGGACTCAAAACGGTGTCGTTTTGAATCCAATTATCGATTCAACGCAATGCGGCGAGAGTTCGAATTTGAGTTCGAGCGCGAGGAAGGTGAAGAAGGTTGGGATGGTGAATGGGAGTTTCAGTGTTGTGAACCAGCTTCATGCGTTGGTTTTGAGGAAATGTTTGGATATTGATGCACATGTTTTGTGTGTTGCGGAGGTTGATTCTAGGGTTAGGGTTGTTGTGATTGTTGATGTTTATCTTCCGGTTTTGGTTTGGAGTAGTGGTTGGCAGTTTCCGAAATCGGGGTCTGTTGCTGGTGCTGTTTTCCGACATTTAAGCTGTGATTGGAATGAGAGAAGTTCAATGCTTTCTGATCCAGACTACTGTAGAAAGATACATGGAGAAAATGAGTGCATTTGGAACCTTTCTGATTGTCATGTACTTGGTTGCAAGCTCCATTCTTCTGTGAGCGGTTCTTCAAGGGAAAGGCTATTTGAACTTCATGAAATTTTTAAGACAGTACCTTCACCTTGTGTAGGAAATCAGCATAACTTTAATATTTCCAAGATAATACCTATGGACAACACTGGCAGATCTGGGATTTGGGATATCTCTGATGATATTTTAATTAAAATTCTATATTCCCTGGGCCCACTGGACCTCAATAGGGTTTCTGCAACGTGTCATCATCTAAGATCCTTGGCTGCTTCGGTAATTCCTTGCACAAAGTTAAATCTGTTTCCTCATCAGCAGGCAGCAGTTGAATGGATGTTGCAACGTGAACGAAATGCTGAACTTCTGCCACATCCTTTATATGTTGCTCTTTCAACTGATGATGGCTTTAGTTTCCACGTAAATACTGTATCTGGTGATATAGTCATTGGGGAAACTCCCACTATCAAAGATTTTCGTGGAGGAATGTTTTGTGACGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTTTCTCTTATCACAAAGACACAAGGTACATTGGCGGATCCACCAGATGGGTCACCAGTAGTCTGGTGTCAACATAGCACTAACAAAAAATGTGGCTATTATGAGATCAGTGGTAATAACACGACTGGTGGTTATACTATTATGGGTAAGAGGGATGTGAGCCAAGATTCAGGTAGAAGTAATGAGAACCACGATTTCTCCTCCGAAAGAGCCAAATTGTTAAATCCTGATCAGGAAATCACTAAACCTCATGATTCATGTTCTGTAGGAGAAGACACATCACCTCCTGATGCTTGCTCTGAGGAATATTCTCCTGCTAGTCGGTGCACTAGAAGCTTGAGTCGCGTAAAGAAAAATTTATATTTCACATATGACGAGGAAGCTATGATTTCCAACGGTAGAAGAGTTGGCAAAAGATCAATTAAAACAAAACATGCATCAGATGTTGCATCCCATGTGTCTCAAAACAAGCTTGTTGATACTTCATACGGTTCTAGACAGAGTTACAAGTTGCATGGGAAGCGTAAAGTTGATTGTTTGGAGTACAGTGATACGTGGATTCAGTGTGATGCTTGTCACAAATGGCGAAAGCTTGCGGATAACAGTATGGCTAATTCCAATGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTGTATCAGAGTTGTAGAGTTCCAGAACAGTCTTTTAAGAACAGCTCTAAGATAACTTACTTACCAGGATTTCACTTGAAAGGAACTCCTGGTGGTGTGAAACAAAATGTTTCATTTTTCACTAGTGTACTTAAGGAGCACTACTCATTGGTAAATTCTCGGACGAAGGAGGCTCTGACTTGGTTGGCCAGAATTTCTATTGACAAGCTTGCAGAAATGGAGACAAATGGAATACGGAGTCCTATTTTAAACAACTGCACTTTGTCTAACGGGACTGTGAATCCATACCACAAAGTATTTCAAGCATTTGGCCTCAAAAAGAAAGTAGAGAAAGGTGTATACAGGTGGTTCTACCCAAAAAATCTTAAAAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTCTGTGAGCCATTAGATTTGGTTAGGTTATACTTGTCAAGAGCAACCCTGGTAGTTGTACCAGCAAATTTGGTCGATCATTGGAAAGCACAAATAGAAAAGCATGTGAGGCCTGGTCAATTGCAGGTTTATGTTTGGAACGATCATCGGAAACCATCTGCGCACTCGCTTGCTTGGGATTATGATGTTGTCATCACTACATTTAGCCGTTTGAGTGCGGAGTGGGGCCCACGTAAGAAGAGTGCTCTAATGCAAGTGCACTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGCTCAAGCCTGAGCTTAACAAACAAGTTGCAAATGACTATTTCATTGGTTGCTTCAAATCGGTGGATACTAACTGGAACTCCAACACCGAACACTCCTAACAGCCAACTTACACATCTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCAAAAATCATGGGATGCTGGCGTGCTTAGGCCATTCGAGGCAGAGATGGAAGAAGGTCGGTCTCGTCTGTTGCATTTACTTCAGAAATGCATGATTAGTGCTAGAAAGGAAGATTTGCAAAGTATTCCACCATGCATCAAGAAAGTTGTTTTACTAGATTTTAATGAGGAACATGCTAGAAGTTACAATGAGTTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGATCCTTCGCATGTGGAAAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGGAGCTATAAACAATGTGAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAACAATGGATATGTTAGTGAAAAATGGTCTAGATTCTACTTCAGGGGAGTATACCTCCATAAGATACAGTCTCCTGTTTGGTGGCCACTGTGTCAGGTGCAAGGCATGGTGCCGACTACCTCTCATTACGCCATGTCGACATATGTTGTGCCTTGATTGTGTTTCCATTGACAAGACAAAGTGTACATATCCTGGCTGTGATAACTTGTATGAGATGCAGAGTCCTGATTCAATGGCACGGCCAGAAAATCCTAACCCAAAGTGGTCTGTACCCCAAGATCTTATTGAGTTACAACCTTCTTATGCGCAGGATAATTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTTGCATATCTCGTCCAGAGGTTGAAAGCTTTGCAGGGAACCAATGAAGAGATGAGTTCATATACTGGCAATAGCAATGCGATGTATATTGAAAATAGTTTTCCTTTGCACACAAGTCATTCCTCATCATCATTCCAGGAATGTTCAAGTAGCATCAGTACCAACGTAGTCCCTGAAAAAGTTTTGATATTTACTCAGTTTCTTGAGCATATACATGTCATTGAACAGCAGTTGGCTGCCAACGATATCAAATATACTGGAATGTATACCCCAATGCATTCTAGTAATAAGAAGAAGTCGTTAGCCAAGTTCCAGCATGATTCCAGTTGTATGGCACTTCTAATGGATGGGAGTGCTGCATTGGGTCTTGACTTAAGTTTTGTTACCCATGTATTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGTATGGGTGCTTCCCGTCCTATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGCATTTTTACAGGATGCTGACAAACGTAGAAGATTTCATAATAAAGATGTCGTCAAATCTGAAGATGGTGGGGGACGAGGGTGTCGATCGGTGCATGATTTTGCTGAAAACAATTATCTACTGGAACTTAAATTTGTATAA 3999 0.4149 MSTTTNDPFSNHKLCGFLSTVLTVTPQHQNDTRFNDRCEFFNDNNAIAFRTQNGVVLNPIIDSTQCGESSNLSSSARKVKKVGMVNGSFSVVNQLHALVLRKCLDIDAHVLCVAEVDSRVRVVVIVDVYLPVLVWSSGWQFPKSGSVAGAVFRHLSCDWNERSSMLSDPDYCRKIHGENECIWNLSDCHVLGCKLHSSVSGSSRERLFELHEIFKTVPSPCVGNQHNFNISKIIPMDNTGRSGIWDISDDILIKILYSLGPLDLNRVSATCHHLRSLAASVIPCTKLNLFPHQQAAVEWMLQRERNAELLPHPLYVALSTDDGFSFHVNTVSGDIVIGETPTIKDFRGGMFCDEPGLGKTVTALSLITKTQGTLADPPDGSPVVWCQHSTNKKCGYYEISGNNTTGGYTIMGKRDVSQDSGRSNENHDFSSERAKLLNPDQEITKPHDSCSVGEDTSPPDACSEEYSPASRCTRSLSRVKKNLYFTYDEEAMISNGRRVGKRSIKTKHASDVASHVSQNKLVDTSYGSRQSYKLHGKRKVDCLEYSDTWIQCDACHKWRKLADNSMANSNAAWFCSMNTDPLYQSCRVPEQSFKNSSKITYLPGFHLKGTPGGVKQNVSFFTSVLKEHYSLVNSRTKEALTWLARISIDKLAEMETNGIRSPILNNCTLSNGTVNPYHKVFQAFGLKKKVEKGVYRWFYPKNLKNLTFDVAALGMALCEPLDLVRLYLSRATLVVVPANLVDHWKAQIEKHVRPGQLQVYVWNDHRKPSAHSLAWDYDVVITTFSRLSAEWGPRKKSALMQVHWFRIILDEGHTLGSSLSLTNKLQMTISLVASNRWILTGTPTPNTPNSQLTHLQPLLRFLHEEAYGLNQKSWDAGVLRPFEAEMEEGRSRLLHLLQKCMISARKEDLQSIPPCIKKVVLLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSGAINNVRLSCCVAGHIKVTHAGEDIQETMDMLVKNGLDSTSGEYTSIRYSLLFGGHCVRCKAWCRLPLITPCRHMLCLDCVSIDKTKCTYPGCDNLYEMQSPDSMARPENPNPKWSVPQDLIELQPSYAQDNWDPDWQSTSSSKVAYLVQRLKALQGTNEEMSSYTGNSNAMYIENSFPLHTSHSSSSFQECSSSISTNVVPEKVLIFTQFLEHIHVIEQQLAANDIKYTGMYTPMHSSNKKKSLAKFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLAFLQDADKRRRFHNKDVVKSEDGGGRGCRSVHDFAENNYLLELKFV* 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0404 1332 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1162 1304 IPR001650 -
Mtr3g0404 1332 Pfam Helicase conserved C-terminal domain 1162 1265 IPR001650 -
Mtr3g0404 1332 SMART ultradead3 285 872 IPR014001 -
Mtr3g0404 1332 Gene3D - 544 597 - -
Mtr3g0404 1332 Gene3D - 1101 1312 IPR027417 -
Mtr3g0404 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 803 1291 IPR027417 -
Mtr3g0404 1332 MobiDBLite consensus disorder prediction 418 442 - -
Mtr3g0404 1332 CDD SF2_C_SNF 1170 1275 - -
Mtr3g0404 1332 ProSitePatterns Zinc finger RING-type signature. 1039 1048 IPR017907 -
Mtr3g0404 1332 Pfam SNF2-related domain 292 959 IPR000330 GO:0005524|GO:0140658
Mtr3g0404 1332 ProSiteProfiles Zinc finger CW-type profile. 543 594 IPR011124 GO:0008270
Mtr3g0404 1332 SUPERFAMILY F-box domain 237 280 IPR036047 GO:0005515
Mtr3g0404 1332 SMART helicmild6 1183 1265 IPR001650 -
Mtr3g0404 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 725 901 IPR027417 -
Mtr3g0404 1332 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 696 861 IPR014001 -
Mtr3g0404 1332 Gene3D - 712 905 IPR038718 -
Mtr3g0404 1332 MobiDBLite consensus disorder prediction 410 465 - -
Mtr3g0404 1332 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 38 1323 - -
Mtr3g0404 1332 Pfam CW-type Zinc Finger 548 591 IPR011124 GO:0008270
Mtr3g0404 1332 CDD DEXDc_SHPRH-like 720 902 - -
Mtr3g0404 1332 PANTHER OS01G0952200 PROTEIN 38 1323 - -
Mtr3g0404 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 370 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0404 289 367 RAD5 or RAD16-like Gene Family AT5G22750 34.884 1.47e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr3g0404 SNF2_N 5.7e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0404 - - gmx:100803102 2040.39