Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0394 ATGCTATGCACACTAAAATCACTACCTAAAATGGCTTCCTTTTTCTTGTCCTCACTAGTTTTAAAGTTCATTGCTGCTCTTATCCTTCTTCCTCAAGGGCTTGCTGCGTACAACCTTACTCCAACTTACAAGTCTCCAAATAGTAAGTTGCCACCTTCTTTTTCTTTTGAGGAAGAGGTACCACCTTCGAAGAAGAGAATAGCACCTTTTAGAAATTTTGAGAAAGAGTTACGACGTTTTTTTTCTTTTGAGGACGAGTTACGAAATTTTGAGGAACAGTTACGACGATCTCCAATTTACAATCCATGGGAGAAGAGGCCAGCACCACCATATCAGAAGCTACTGTTTATATATTCCAACCATAATTTTTTTGGGAACCTCACAACAAGTCCATCATGGCAAAGGTTGGGGTCAAAAAACATCACTGATCCACAAGAACTTGATAAAGCTGAGGATAATATGCAAAGTTTAATAAGCGAAGCTACTTTGGAGACCAATAAGTTTTATGGAATGAGGGAGTTCAATTTGAGTAATAGTCCTATTGAAAAAAGATATGGATTGGTGCAGTGCAGTAGGGACCTTAATGAAAATCAATGTAATCAATGTTTGGTGGCTATGTTAGACAAAGTTCCTAAATGCTGTGGGACAAAGATTGGTTGGCAGGTTCTTGCTCCAAGTTGTTTGATAAAGTATGATGATTTTATGTTCTACCAGCTTACTTTTGCTCCAAATTCAGAGCAAGGAAGTTCAAGTATATCAAAAACCTTGATCAAAATTATGATCTTTGAGTTGGTGATGGCTCTTGTTCTCATAAGTTGTGGGATCTTCTTCATATGGAGGCGGAATCACTCAAATAAAGATCGACTAGCATCAAAGAAAATTCCTATATCTCATCCTGGCCATACTCAAGGAGAGGATACATATAATGCAGACCTCCCAATAATCCCTTTAATTTGGATTCGACAAAGCACTAATAACTTTTCAGAATTATGTAAACTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGTAATTTAGTAGATGGAACAGAAGTTGCAATCAAAAGGCTGTCTATAACATCTGATCAAGGTTTAGAAGAGTTCACAAATGAAGTAATCTTTATAGCTAAATTGCAACATAGGAACCTTGTGAGACTATTGGGTTGTTGCATTGAGGATAATGAAAAGTTGCTTCTATATGAATACATGCCAAACTCTAGCCTCGACTTTTATCTATTTGATGAAGAAAAAAGAAAACTTCTAGATTGGAACTTAAGACTAAACATTATTAATGGAATTGCAAAAGGACTCTTGTATCTTCATGAAGACTCTAGACTTAGAGTAATCCATAGAGACCTAAAAGCAAGTAATGTTCTTTTAGATCAAGAGATGAATCCAAAAATATCTGATTTTGGATTGGCAAGGGCATTTGAAAAAGGTCAAAGTCAAGAAAACACAAGAAGAATTATGGGCACATATGGTTACATGGCTCCAGAATACGCTATGGAAGGGTTATATTCAGTGAAAACAGATGTTTTCAGTTATGGAGTTCTTTTATTAGAAATAATTTGTGGAAAAAAGAATAGTGGATTCTATATCGGAGAACATGGTCAAAGTCTTCTTATATATAGTTGGAATCTTTGGTGTCAAGGAAAAAGTTTGGAACTGTTGGATACAATACTGAAAAATACATACATAAGCAATGAAGTTATGAAGTGTATACATATTGGTTTGTTGTGTGTACAAGAAGATGCAGTGGATAGACCAACCATGTCCAATGTTGTTGTCATGCTGGCAAGTGACACAATAGCACTTCCCAATCCTAAACATCCTGCATTTTCAGTTGGAAGAAAAGTAAATGATGATCCTTCTGTTAATGAAGTAACAATATCAAATATTTTTCCTAGGTAG 1911 0.3579 MLCTLKSLPKMASFFLSSLVLKFIAALILLPQGLAAYNLTPTYKSPNSKLPPSFSFEEEVPPSKKRIAPFRNFEKELRRFFSFEDELRNFEEQLRRSPIYNPWEKRPAPPYQKLLFIYSNHNFFGNLTTSPSWQRLGSKNITDPQELDKAEDNMQSLISEATLETNKFYGMREFNLSNSPIEKRYGLVQCSRDLNENQCNQCLVAMLDKVPKCCGTKIGWQVLAPSCLIKYDDFMFYQLTFAPNSEQGSSSISKTLIKIMIFELVMALVLISCGIFFIWRRNHSNKDRLASKKIPISHPGHTQGEDTYNADLPIIPLIWIRQSTNNFSELCKLGEGGFGPVYKGNLVDGTEVAIKRLSITSDQGLEEFTNEVIFIAKLQHRNLVRLLGCCIEDNEKLLLYEYMPNSSLDFYLFDEEKRKLLDWNLRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLARAFEKGQSQENTRRIMGTYGYMAPEYAMEGLYSVKTDVFSYGVLLLEIICGKKNSGFYIGEHGQSLLIYSWNLWCQGKSLELLDTILKNTYISNEVMKCIHIGLLCVQEDAVDRPTMSNVVVMLASDTIALPNPKHPAFSVGRKVNDDPSVNEVTISNIFPR* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0394 636 Pfam Protein tyrosine and serine/threonine kinase 331 597 IPR001245 GO:0004672|GO:0006468
Mtr3g0394 636 ProSiteProfiles Gnk2-homologous domain profile. 129 236 IPR002902 -
Mtr3g0394 636 ProSiteProfiles Protein kinase domain profile. 327 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g0394 636 Coils Coil 147 167 - -
Mtr3g0394 636 Pfam Salt stress response/antifungal 151 232 IPR002902 -
Mtr3g0394 636 Gene3D Transferase(Phosphotransferase) domain 1 403 605 - -
Mtr3g0394 636 PANTHER PROTEIN KINASE DOMAIN 114 626 - -
Mtr3g0394 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Mtr3g0394 636 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 114 626 - -
Mtr3g0394 636 SMART serkin_6 327 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g0394 636 Gene3D - 132 236 IPR038408 -
Mtr3g0394 636 Gene3D Phosphorylase Kinase; domain 1 295 402 - -
Mtr3g0394 636 Pfam Domain of unknown function (DUF3403) 600 636 IPR021820 GO:0004674
Mtr3g0394 636 SUPERFAMILY Protein kinase-like (PK-like) 308 598 IPR011009 -
Mtr3g0394 636 CDD STKc_IRAK 333 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0394 Mtr-Chr3 4677102 4686548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0394 102 636 Receptor kinase-like Gene Family AT4G05200 41.421 6.10e-146 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr3g0394 PK_Tyr_Ser-Thr 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0394 - - ahf:112718031 736.487