Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0370 ATGAGTATGTTAGGTCTTAGAGACCTAGTTCTCATAGCTCCATCACCTTCTTCTCTTCAACATCATCATCAACAAAATCAAAATCAAAACCAAAACCAAAACCAACCCATTTCACATGATCACAATTCAAACCACTCTTTACCTTCATCAGCTTCATTAAGTGTTGGTTTTGGCATTTTTCCACTTCTCACTGCTACACCTTGCATGCCACAACAACAATCTCAAAACAATGAAGTTCAAGAAAATCCTAGTAACAATAACAATTTTTGGAATCTTAGGATGTGTCCTGAAGTAGTGAATCTTCCAAAAAAAGGAGTGATCACTGAAGAAGAGAATCATGGAAAAATTGCTATGATGGAGAGTGAAGAAAATGGTGTGTATGGTTCTGAGTATAGAGTGTGTCAAGATTGTGGTAATAGGGCTAAGAAAGATTGTGTGTTTAGAAGATGTAGGACTTGTTGTAAGGGACGTGGTTATGATTGTAGTACTCATTTGAAGAGTACTTGGATTCCTTCGACACGTCGTCGAGAACGGGAGGTGGAGATGTTTGCCGGTGGTGGTGATGGTGAGGGTTGTTCTGGTGTTAAGAGACAAAAAGGTTTATTAGGGTCATCACAAAATGCTGCTGCTACTTCTCATAGCTCTAACTCTAATGGTACTACACCAAAGAGTTTTGCTACTAGCTCCTGTCACCAAGATGCAGGTTTCAAAGAGGGTTTACCAGGTCATGTTAATGCACCAGCTGTATTCAGGTGCCATAGAGTAACTGCTATTGGCAATGGTGAAGATGAATTTGCTTACTTGGCCACAGTTCATATTAGTGGCCATGTTTTCAAAGGGTTTCTCTATGATCATGGTGTTGATGGGAAAAATCCAATGCCTTGTGTTTCAGAACTTCAATTGGGAAATAATTGTAGTGGAAAAAATGGTGAATGTTCTTCTGCAATTGGTGTTCCCAACAATAATGCTTACCCTGCTTCTGCTAGCTAG 990 0.396 MSMLGLRDLVLIAPSPSSLQHHHQQNQNQNQNQNQPISHDHNSNHSLPSSASLSVGFGIFPLLTATPCMPQQQSQNNEVQENPSNNNNFWNLRMCPEVVNLPKKGVITEEENHGKIAMMESEENGVYGSEYRVCQDCGNRAKKDCVFRRCRTCCKGRGYDCSTHLKSTWIPSTRRREREVEMFAGGGDGEGCSGVKRQKGLLGSSQNAAATSHSSNSNGTTPKSFATSSCHQDAGFKEGLPGHVNAPAVFRCHRVTAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKNPMPCVSELQLGNNCSGKNGECSSAIGVPNNNAYPASAS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0370 329 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 133 175 IPR006510 -
Mtr3g0370 329 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 328 - -
Mtr3g0370 329 MobiDBLite consensus disorder prediction 203 226 - -
Mtr3g0370 329 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 328 IPR007818 GO:0003700|GO:0006355
Mtr3g0370 329 MobiDBLite consensus disorder prediction 17 50 - -
Mtr3g0370 329 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 240 287 IPR006511 -
Mtr3g0370 329 Pfam Domain of unknown function (DUF702) 132 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0370 Mtr-Chr3 4274009 4279512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0370 1 324 C2H2 Transcription Factor Family AT5G12330 41.964 7.65e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mtr3g0370 DUF702 3.7e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0370 - - gmx:100806835 449.514