Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0353 ATGAATGAAAAAATAGAAAACAAAGATCAAATTCAACAAAACCAAGAATCACCAAGAAAATTACAAAACAATATTATTGGTAGTGGAAATGAGAGACTAAAAAGAGATGAATGGAGTGAAGGAGCAGTTACAACACTTCTTGAAGCATATGAATCAAAATGGGTACTTAGAAATAGAGCAAAACTCAAAGGACAAGATTGGGAAGATGTTGCAAAACATGTTTCATCAAGATCAAACTCAACTAAGTCACCAAAGACACAAACACAGTGTAAGAATAAGATTGAGTCAATGAAGAAAAGGTATAGATCAGAATCAGCTAGTTCAGATGTTTCATCTTGGCCTTTGTATTCTAGACTTGATCTTCTTCTACGTGGGACAGGACAATTATCTACAACAACACTAAACAATAATCAAGCAGGTTTGGTTTTGTTGGAACCATCATCACTTGTTATGTCACATGCACAAGAAGAAGTTCATCAGCCACTTGTTCCTCCACCTATTACAACTGCTCAAAACTCACATGGATCAAATGGCGTTGATAAATTAATCAAGGAAGATGAAATAGAAACTAAGTCATCTGACCATATAGCTAACAAGAATCCATTGGAAACTGATAGTAGCACGCCGGCGCTTTACAGCGAAAAAGACGAGCAAAGAAGCAAAAAGAGGAGAATGAGAACAGAAAACAATAACAACAAGAGGCAAAAGAAAGAAACAATGGGAATAGCAGAAAGCATAAGGTGGGTAGCAGAGGTGGTAGTGAGATCAGAACAAACAAGAATGGAGACATTGAAAGAGATAGAGAAGATGAGAGTTGAAGCTGAGGCAAAGAGAGGAGAAATGGAAATCAAGAGAACTGAAATTATTGCTAATACACAACTTGAAATTGCTAGGATCTTTGCAAATGTTAATAATAAAGATAAAGATAAAGATGTTGATGTTGATTCATCATTGAGAATTGGAAGAAGCTAA 972 0.3549 MNEKIENKDQIQQNQESPRKLQNNIIGSGNERLKRDEWSEGAVTTLLEAYESKWVLRNRAKLKGQDWEDVAKHVSSRSNSTKSPKTQTQCKNKIESMKKRYRSESASSDVSSWPLYSRLDLLLRGTGQLSTTTLNNNQAGLVLLEPSSLVMSHAQEEVHQPLVPPPITTAQNSHGSNGVDKLIKEDEIETKSSDHIANKNPLETDSSTPALYSEKDEQRSKKRRMRTENNNNKRQKKETMGIAESIRWVAEVVVRSEQTRMETLKEIEKMRVEAEAKRGEMEIKRTEIIANTQLEIARIFANVNNKDKDKDVDVDSSLRIGRS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0353 323 Coils Coil 264 284 - -
Mtr3g0353 323 MobiDBLite consensus disorder prediction 11 29 - -
Mtr3g0353 323 Pfam Myb/SANT-like DNA-binding domain 35 121 IPR044822 -
Mtr3g0353 323 MobiDBLite consensus disorder prediction 76 91 - -
Mtr3g0353 323 MobiDBLite consensus disorder prediction 210 239 - -
Mtr3g0353 323 Gene3D - 38 103 - -
Mtr3g0353 323 MobiDBLite consensus disorder prediction 73 92 - -
Mtr3g0353 323 Coils Coil 215 235 - -
Mtr3g0353 323 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 14 317 IPR044823 -
Mtr3g0353 323 MobiDBLite consensus disorder prediction 190 239 - -
Mtr3g0353 323 MobiDBLite consensus disorder prediction 1 34 - -
Mtr3g0353 323 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 14 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0353 Mtr-Chr3 4104374 4107308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0353 27 183 Trihelix Transcription Factor Family AT3G14180 32.121 1.18e-16 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mtr3g0353 Myb_DNA-bind_4 1.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0353 - - gmx:100799917 397.897