Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0349 ATGAAAATCCCTTGTTGTTCGGTGTGCCAAACGCGGTACAACGAAGAAGAACGAGTTCCTCTTCTTCTTCAATGCGGTCATGGCTTCTGCAAAGAGTGTCTTTCTAGAATGTTCTCATCTTCCTCCGACGCTAATCTCACATGTCCTCGTTGCCGCCACGTGTCCACCGTCGGTAACTCAGTTCAAGCTCTCCGCAAAAACTACGCCGTTCTTTCGTTAATCCTCTCCGCCGCCGATTCCGCCGCCGCTGCCGGAGGTGGTGGCGGCGGTGATTGTGATTTCACCGATGATGATGAAGACCGAGATGACAGCGAGGTTGACGACGGTGACGATCAGAAACTAGATTGCCGCAAGAACAGCCGCGGATCGCAGGCGTCGAGTTCGGGAGGATGTGCGCCGGTGATTGAGGTTGGAGTGCATCAGGATTTGAAATTGGTGAGGAGGATTGGGGAAGGGAGGAGAGCTGGAGTGGAGATGTGGTCGGCGGTGATTGGTGGTGGAAGGTGTAAGCATCAAGTGGCGGTGAAAAAGGTGGTATTGAATGAGGGAATGGATTTGGATTGGATGTTAGGGAAGTTGGAGGATTTGCGTAGGACTTCGATGTGGTGTAGGAATGTTTGTACTTTTCATGGTGCTATGAAGGTTGATGAGGGTTTGTGTCTTGTGATGGATAAGTGTTTTGGATCGGTTCAATCGGAGATGCTAAGGAATGAAGGAAGACTCACTTTGGAACAAGTCTTGAGATATGGGGCAGACATTGCACGAGGGGTTGTTGAACTTCATGCTGCAGGCGTTGTTTGCATGAGTTTAAAGCCTTCCAATCTACTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCTAGACCTGAGTGCGACTCCGCAAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTACACAGCACCAGAGGCCTGGGAACCTGTGAAGAAGTCATTAAATTTGTTCTGGGATGATGGAATAGGTATATCTCCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTCGAGATGTGCACGGGTGCCATTCCTTGGGCTGGTTTAAGTGCAGAAGAAATCTATCGACAAGTTGTCAAGGCAAAGAAACAGCCTCCACAATATGCTAGTGTGGTTGGTGGTGGAATTCCAAGGGAATTGTGGAAGATGATTGGAGAATGCTTACAATTCAAACCATCTAAAAGACCTACCTTCAATGCAATGCTGGCAATATTTCTCCGTCATTTGCAAGAAATACCACGCAGTCCTCCTGCAAGCCCTGATAATGACCTTGTTAAGGGCTCTGTATCAAATGTAACAGAGGCTTCCCCAGTACCTGAATTAGAGATTCCTCAGGACCCAAATCGTCTCCATCGACTTGTGTCTGAAGGGGATGTCACTGGCGTTAGAGACTTTCTGGCCAAGGCTGCATCCGAAAATGAAAGCAACTTCATATCTTCTCTATTGGAAGCTCAAAATGCTGATGGGCAAACGGCTCTCCACTTGGCTTGTAGACGTGGCAGTGCAGAACTGGTCGAGACAATTCTGGATTATCCAGAGGCAAATGTTGATGTCTTGGACAAAGACGGGGATCCTCCTCTTGTTTTTGCTTTAGCAGCTGGGTCCCATGAATGTGTATGTAGCCTTATCAAAAGAAATGCTAATGTGACATCACGATTAAGAGATGGCTTGGGCCCATCAGTAGCTCACGTTTGTGCCTATCATGGTCAGCCAGATTGTATGCGAGAGTTACTTTTAGCTGGAGCTGATCCCAATGCAGTGGATGACGAAGGTGAATCTGTACTTCATAGGGCAATTGCCAAGAAGTTCACAGACTGTGCTCTTGTGATAGTGGAAAATGGAGGCTGTAGATCAATGGCCATCTCGAATTCAAAAAATTTGACACCGCTGCACTTGTGTGTAGTAACATGGAATGTTTCTGTTGTGAAGAGATGGGTGGAAGTTGCAACTGCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTATTGGCACTGCCTTGTGCATGGCAGCCGCTTCTAAGAAAGACCATGAAAGTGAGGGGAGAGACTTGGTGCAGATATTGCTTACAGCAGGAGCTGATCCATCTGCTCAAGATTCACAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACAAATGATGTGGACTTGGTTCAGGTTATTCTTGCTGCTGGTGTTGATGTGAACATTCGAAATGTGCACAATAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGACATGTGTTGGGCTGCTTCTAGATGCTGGGGCGGATTGTAATTTGCAGGATGATGATGGTGATAATGCTTTCCATATAGCAGCTGAAACAGCAAAAATGATACGTGAAAATCTGGACTGGCTTGTTGTGATGCTATTGAATCCTGATGCTGATATTGAAGTCAGAAACCACAGAGGCAAGACACTACGAGACATCTTAGAAGGTCTACCCCGAGAGTGGTTATCCGAAGATTTGATGGAGGCACTCGTGAATAGAGGAGTTCATTTATCTCCTATAACATTTGACGTATTAGATTGGGTGAAGTTTAAAAGAACAGTCACAGAACCAAAACATGGGTGGCAAGGTGCTAAACCAAATAGTGTTGGCTTTGTGCAAAGTGTGCCAGGCAGAGATAATGATGATCTCATTGTTTCATTTTGTTCGGGCGAGGTTCGTGTGCTGACAAGTGAAATTGTAAAACTCATACCGTTGGATAGGGGACAGCATGTACAACTGAAAGGAGATGTAAACGAACCTAGGTTTGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACAGTATTATGTGTTGACCCAGAGGATGGAATCCTCCGTGTTGGATTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGGGTTGAGGAGTTCAAGGTTGGAGATTGGGTTCGTGTTCGTCCAACCCTTACAACTTCAAAGCATGGATTAGGAAATGTGGTACCAGGAACCATTGGCATTGTATATTGTATCCGACCTGACAGTAGTTTGTTAGTCGAGTTGAGCTATGTTCAAAATCCATGGCATTGTGAACCAGAGGAGATTGAGCATGTTCCTCCTTTTAGGATTGGTGATAGGGTATGTGTGAAGCGATCTGTCGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCACAGTGTTGGAAGAATAAGTGAGATTGAGAATGATGGTCTCTTAATAATAGAAATACCAAATCGACCCATACCATGGCAAGCTGATCCATCTGATATGGAGAAGGTGGAAGATTTTAAGGTTGGAGATTGGGTCAGAGTGAAAGCTTCAGTATCTTCTCCAAAATATGGATGGGAGGATATTACAAGGAACAGTATTGGTGTAATTCATAGCTTGGAAGAGGATGGCGATATGGGTGTTGCCTTTTGCTTCAGAAGTAAGCCTTTTTCGTGCTCGGTCACTGATGTGGAGAAAGTTCCTCCTTTTGAGGTGGGACAAGAAATTCGTGTGATGCAATCCGTTAATCAGCCACGGCTTGGGTGGTCAAATGAATCACCAGCAACTGTTGGAAAAATAGTGCGAATTGACATGGATGGTGCCCTCAATGCGAGGGTCACTGGTAGGCAGAGCTTGTGGAAAGTTTCTCCTGGAGATGCAGAACGACTTCCAGGATTTGAGGTTGGAGATTGGGTACGCTCTAAACCAAGCCTGGGAAATAGACCAAGTTATGACTGGAATAGTGTTGGGAGAGAGAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATATTTGGAGTTGGCTTGTTGTTTCCGTAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTCCTAGCTTTAAAGTCGGGCAGTATGTTAGGTTCCGACCTGGTTTGGCTGAACCCAGGTTTGGTTGGGGCGGGGCTCAGCCTGAATCTCAAGGTATTATAACCAATATTCATGCGGATGGAGAAGTCAGGGTTGCATTCTTTGGTTTGTCGGGACTGTGGAAAGGCGATCCTTCAGATCTGCAGGCAGAACAAATCTTTGAAGTGGGAGAGTGGGTGAGGCTGAAAGAAAACGTAAATAATTGGAAATCAATTGGCCCAGGTAGTGTCGGTGTCGTTCAAGGAATAGGTTATGAAGGAGGTGAAACTGACAGAAGCACGTTTGTTGGCTTTTGTGGGGAACAAGAAAAATGGGTGGGACCAAGTTCCCATCTAGAAAGAGTTGACAAACTCATTGTGGGACAGAAGGTTAGAGTTAAACAAAATGTTAAACAACCTAGGTTTGGGTGGTCAGGGCACACCCATGCTAGTATTGGTACTATACAAGCAATTGATGCTGATGGAAAACTTCGGATATACACTCCAGCAGGTTCAAGAACATGGATGTTAGACCCATCAGAAGTGGAGGTGGTAGAAGAGAAGGAGCTATGTATTGGAGACTGGGTAAGGGTTAGAGCATCAGTTTCCACTCCAACCCACCATTGGGGGGAAGTGAGTCATTCAAGCATCGGGGTGGTGCATCGGGTGGAAGATGATAATTTATGGGTGTCATTCTGTTTTGTGGAGAGATTATGGCTTTGTAAGGCAAGTGAAATGGAACGGGTTAGACCGTATAAAGTGGGGGACAAAGTAAGGATCAGAGATGGACTTGTATCACCAAGGTGGGGATGGGGGATGGAGACGCACGCCAGCAGGGGGCATGTTGTAGGAGTAGATGCAAATGGTAAACTAAGAATAAGATTTCGATGGAGGGAAGGGAGACCTTGGATAGGAGACCCTGCTGATATTGCTCTTGATGAGAACTGA 4887 0.4608 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCKECLSRMFSSSSDANLTCPRCRHVSTVGNSVQALRKNYAVLSLILSAADSAAAAGGGGGGDCDFTDDDEDRDDSEVDDGDDQKLDCRKNSRGSQASSSGGCAPVIEVGVHQDLKLVRRIGEGRRAGVEMWSAVIGGGRCKHQVAVKKVVLNEGMDLDWMLGKLEDLRRTSMWCRNVCTFHGAMKVDEGLCLVMDKCFGSVQSEMLRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMSLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSAKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISPESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRQVVKAKKQPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFNAMLAIFLRHLQEIPRSPPASPDNDLVKGSVSNVTEASPVPELEIPQDPNRLHRLVSEGDVTGVRDFLAKAASENESNFISSLLEAQNADGQTALHLACRRGSAELVETILDYPEANVDVLDKDGDPPLVFALAAGSHECVCSLIKRNANVTSRLRDGLGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKFTDCALVIVENGGCRSMAISNSKNLTPLHLCVVTWNVSVVKRWVEVATADEIAEAIDIPSPIGTALCMAAASKKDHESEGRDLVQILLTAGADPSAQDSQNGRTALHTAAMTNDVDLVQVILAAGVDVNIRNVHNSIPLHLALARGAKTCVGLLLDAGADCNLQDDDGDNAFHIAAETAKMIRENLDWLVVMLLNPDADIEVRNHRGKTLRDILEGLPREWLSEDLMEALVNRGVHLSPITFDVLDWVKFKRTVTEPKHGWQGAKPNSVGFVQSVPGRDNDDLIVSFCSGEVRVLTSEIVKLIPLDRGQHVQLKGDVNEPRFGWRGQSRDSIGTVLCVDPEDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRVRPTLTTSKHGLGNVVPGTIGIVYCIRPDSSLLVELSYVQNPWHCEPEEIEHVPPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHSLEEDGDMGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIRVMQSVNQPRLGWSNESPATVGKIVRIDMDGALNARVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGNRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSFKVGQYVRFRPGLAEPRFGWGGAQPESQGIITNIHADGEVRVAFFGLSGLWKGDPSDLQAEQIFEVGEWVRLKENVNNWKSIGPGSVGVVQGIGYEGGETDRSTFVGFCGEQEKWVGPSSHLERVDKLIVGQKVRVKQNVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSRTWMLDPSEVEVVEEKELCIGDWVRVRASVSTPTHHWGEVSHSSIGVVHRVEDDNLWVSFCFVERLWLCKASEMERVRPYKVGDKVRIRDGLVSPRWGWGMETHASRGHVVGVDANGKLRIRFRWREGRPWIGDPADIALDEN* 1629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0349 1628 CDD RING-HC_ScPSH1_like 5 52 - -
Mtr3g0349 1628 Gene3D - 725 857 IPR036770 -
Mtr3g0349 1628 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 1627 - -
Mtr3g0349 1628 ProSiteProfiles Ankyrin repeat profile. 793 831 IPR002110 GO:0005515
Mtr3g0349 1628 Gene3D Transferase(Phosphotransferase) domain 1 139 445 - -
Mtr3g0349 1628 ProSiteProfiles Ankyrin repeat profile. 512 545 IPR002110 GO:0005515
Mtr3g0349 1628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Mtr3g0349 1628 SMART ring_2 6 51 IPR001841 -
Mtr3g0349 1628 MobiDBLite consensus disorder prediction 438 470 - -
Mtr3g0349 1628 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Mtr3g0349 1628 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 1627 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Mtr3g0349 1628 MobiDBLite consensus disorder prediction 84 129 - -
Mtr3g0349 1628 Pfam Ankyrin repeats (3 copies) 491 575 IPR002110 GO:0005515
Mtr3g0349 1628 Pfam Ankyrin repeats (3 copies) 703 791 IPR002110 GO:0005515
Mtr3g0349 1628 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Mtr3g0349 1628 ProSiteProfiles Protein kinase domain profile. 143 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g0349 1628 ProSiteProfiles Ankyrin repeat profile. 760 792 IPR002110 GO:0005515
Mtr3g0349 1628 ProSiteProfiles Ankyrin repeat region circular profile. 727 758 - -
Mtr3g0349 1628 SUPERFAMILY RING/U-box 5 58 - -
Mtr3g0349 1628 SMART ANK_2a 512 542 IPR002110 GO:0005515
Mtr3g0349 1628 SMART ANK_2a 546 575 IPR002110 GO:0005515
Mtr3g0349 1628 SMART ANK_2a 469 498 IPR002110 GO:0005515
Mtr3g0349 1628 SMART ANK_2a 687 722 IPR002110 GO:0005515
Mtr3g0349 1628 SMART ANK_2a 760 789 IPR002110 GO:0005515
Mtr3g0349 1628 SMART ANK_2a 649 680 IPR002110 GO:0005515
Mtr3g0349 1628 SMART ANK_2a 614 645 IPR002110 GO:0005515
Mtr3g0349 1628 SMART ANK_2a 727 756 IPR002110 GO:0005515
Mtr3g0349 1628 SMART ANK_2a 581 610 IPR002110 GO:0005515
Mtr3g0349 1628 SMART ANK_2a 793 828 IPR002110 GO:0005515
Mtr3g0349 1628 SUPERFAMILY Ankyrin repeat 503 835 IPR036770 -
Mtr3g0349 1628 Pfam Ankyrin repeats (many copies) 584 631 IPR002110 GO:0005515
Mtr3g0349 1628 Pfam RING-type zinc-finger 6 49 IPR027370 -
Mtr3g0349 1628 ProSiteProfiles Ankyrin repeat region circular profile. 760 792 - -
Mtr3g0349 1628 Gene3D - 468 580 IPR036770 -
Mtr3g0349 1628 SUPERFAMILY Protein kinase-like (PK-like) 140 446 IPR011009 -
Mtr3g0349 1628 Pfam Protein kinase domain 147 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g0349 1628 PRINTS Ankyrin repeat signature 513 528 IPR002110 GO:0005515
Mtr3g0349 1628 PRINTS Ankyrin repeat signature 709 723 IPR002110 GO:0005515
Mtr3g0349 1628 MobiDBLite consensus disorder prediction 92 109 - -
Mtr3g0349 1628 ProSiteProfiles Ankyrin repeat profile. 581 613 IPR002110 GO:0005515
Mtr3g0349 1628 ProSiteProfiles Ankyrin repeat region circular profile. 512 534 - -
Mtr3g0349 1628 Gene3D - 581 724 IPR036770 -
Mtr3g0349 1628 Pfam Mind bomb SH3 repeat domain 1121 1239 IPR040847 -
Mtr3g0349 1628 Pfam Mind bomb SH3 repeat domain 1374 1495 IPR040847 -
Mtr3g0349 1628 Pfam Mind bomb SH3 repeat domain 995 1115 IPR040847 -
Mtr3g0349 1628 Pfam Mind bomb SH3 repeat domain 1247 1368 IPR040847 -
Mtr3g0349 1628 Pfam Mind bomb SH3 repeat domain 1558 1622 IPR040847 -
Mtr3g0349 1628 Pfam Mind bomb SH3 repeat domain 922 989 IPR040847 -
Mtr3g0349 1628 ProSiteProfiles Ankyrin repeat profile. 727 759 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0349 Mtr-Chr3 3997363 4011180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0349 172 426 MAP Kinase Kinase Kinase AT4G18950 27.652 8.01e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Mtr3g0349 Pkinase 8.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0349 K16279 - gmx:100777576 2923.27