Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0343 ATGAAGAAAACCTTTCCCACCACCAACCACCGCACCACCACCCGGCATGACTCTTATCTCCGCCGTCAACCACCGTGGCGAGCTGACCATCACTGGAACCCCAGATTCCAATCCAACCACCTCTATTATCGCCCCCGCCTCCCCTATTTCATCGTCAACCTCCGCCTCACCCACCGCCTTAACCTCCGCCGTGAAGAGATCGAGACCCTGATCGCCGATTGCAAACCAAATCCTGACAAATTTTCATTCCAACCAAACGAAAGCATCACTGCTTCTCTCAATTTCAATAACGGAACAGATGCGATCAGCGCCGTCGTTTGGTTCTGGGAATCACGTTTATCAGAATGCCGTCACGAATTATCGCCCGAGTTCATCGAAATGAACTCCGACAATTCCAAACACGGAGACGAACTCAAAGCTCGTCTCCGAAGCGTATTCATGAGCCATGTGAAAGAACTAATGGAAGGAAAAGAAATAAACCGTTGGATAAAAGAATGGGATCGTTTATCAAAAGAGATTAAAGAAGTTAATAGCTTATTAGGTAAACCTTTTCCAGTTAGGGTTCAAGATGAGAATATTGATAGAAAAAAAATGCTTGATGGTGAAAAAAATTTGGTTGAGAAAAGATTAAAGGAATTTGAATATGCTATGGAGAATATTTTGATGTATTTAGAAGAAAATAATAATAATAATGATGATGATGATGATGTTAATGTGATTAGGTTTGGTGAAAGGTTTGATTGGGAGAAGATTTGTAATTTTATTGTTAGGGAAAGGAGGAGACTTGAAGATGGTTTGCCTATTTATGCTTATAGGAAGGAAATTCTTCAGCAAATATATCATCAACAGATAACAGTGTTGATTGGAGAGACAGGTTCTGGGAAGAGTACTCAATTAGTGCAGTTTCTTGCTGATTCGGGTGTTGGGGCCAATGAGTCAATTGTGTGCACTCAGCCTCGCAGGATTGCTGCAAAATCATTGGCTGAAAGGGTCCGGGAAGAAAGTGGTGGATGTTATGAAGACAGTTCAATCAAGTGTTATTCTTCATTTTCATCTTGGAACAAGTTCGATTCCAGGATAATCTTCATGACAGATCATTGTTTATTGCAGCACTACATGAGTGATAAAAATTTTACTGGGATTTCGTGTATTATAGTGGACGAGGCTCATGAAAGGAGTATAAATACTGATTTACTGTTGGCATTGATAAAGAATTTACTTTCTAAGAGGGTTGAAATGCGGCTTATCATCATGTCTGCCACAGCTGATGCAAAGCAGTTATCTGATTACTTCTATGGTTGTGGAATTTTTCGTGTGCCAGGGAGAAACTTCCCTGTGGAGGTGAGATATGTTCCATCTGAATATGAAGGACGATCTCATTCTTCTGTTGTGGACCCTTATGTTTCCGATGTTGTTAAAATGGCAACTGAAATTCATAGAACAGAGAAAGAAGGAACTATTCTTGCCTTTCTTACATCACAGTTAGATGTAGAATGGGCTTGTGAAAAGTTTGAAGCCCCCTCTGCAGTAGCTTTGCCCTTGCATGGAAAACTTTCGTCTGAAGAGCAATTTCATATTTTCAAGAACTATCCTGGAAAAAGAAAAGTGATATTTTCAACGAATGTCGCAGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGATTGGTTAAAGATAGTCGTTTTGATCCTAGCAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGTTCTGCTAAGCAACGGGCTGGTCGTGCTGGGAGGACCGAGCCTGGTAGATGCTATAGACTGTACTCAGAAGCTGATTATCAGTCTATGGAAACAAATCAAGATCCCGAAATTCGAAGAGTTCATCTTGGCGTAGCAGTTTTGAAGATCCTTGCTTTAGGGGTGAAGAATGTCCAGGATTTCGATTTTGTGGATGCTCCATCCACTAGCTCTATTGAGAGGGCAATCGGGAATCTAATTCAATTAGGAGCCATTAAACTCAACAATGATGTTTATGAATTAACTCCTGAAGGTAGGCGCTTAGCAAGAATGGAGATTGAACCTAGGCTTGGTAAACTCATTCTTGGTTGTTTCCAATATACCTTGGGTAGGGAAGGCATTGCCCTAGCTGCCATGATGGCCAATGCTAGAAGCGTATTTTGCAGAGTTGGTAATGAAGGTGATAAGCAAAAATCTGATTGTCAGAAAGTGCAATTTTGCCATTGCGAGGGTGACCTTTTTACTCTTCTCTCTGTGTACATGGAATGGGAAGTCCAGCCTCAAAATTGGAAGAATAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGATGCCAAAACACATTTTTGGAGTTAGAATCTTGCCTAGAGAGTGAACTTGGCCTTGTTGTTCCAAGTTACTGGCGCTGGGACCCTCATAACCCTTCTATTCACGATAAGAACATGAAAAAGGCTATACTGTCCTCACTTTCTGAAAATGTAGCCATGTACTCTGGACGCAATCAACTTGGTTACATAGTAGCTCAAACGGAGAAACATGTTCAACTACATCCATCTTGTTCCTTGCTTGTATTTTCCCAGAGGCCTAGTTGGGTGGTTTTTTATGAGCTTCGTTCAGAGTCTAATGAATATTTGTTCTGTGTGAGTGCTGTTGACTTTCAATCATTATACAGCCTTAAACCTCCTCCCTTGTTTGATGTATCCAAGATGGAAGAGCAGAAGTTGCAAACAAAGACGCTGGTTGGTTTTGGCAAACATGTTCTCAAGAGATTTTGTGGGAAAGGAAATTTGCTCGGTCATGTTTCTCGTATTAGGAAAGCTTGTATGGATGAAAGAATATTTGTTGACGTGAATTTTGACGAGAACCACATTCAGTTGTATGCCTGTTCCAATGATATGAATACAGCTAGTAAGCTGGTGAATGATGTTTTACAATATGAGAAGAAGAGGTTACACACTGAATGTATGGAAAAATGTTTGTATCATGGGTTTGGTTCCTCATCACCCGTGGCTATGTTTGGCTCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAGCTTCCCTTGAGTGTTGATGTGTTTCACCCAAACGTAAATGCAATTGACGAAATGGAGCTCCTGATGTTTTTTGAGAAAAATACTTCTGGTTGTATATGTGACATGCAAAAGTTCACAGGCATGGTGAAAGATGTTGAGGATAAAGCAAAATGGGGCAAGATAACATTTATGACCTCCAATGCTGCCAAAAGAGCTGCTGAGCTGGATGGAGAAGAGTTTTGTGGTTCGCCCCTAAAAATAGTTCATTCACAGTCAGCTATGGGAGGGGATACAACATTTTCATTTCCTGCAGTTGAAGCAAGAATTTCTTGGCTTCGTAGGCCTATCAAAGCAGTTGGCATAATCAAATGTGATAAAAATGACGTGGATTTCATCATTAGAGATTTTGAAAACCTCATCGTAGATGGAAGAAGGTATGTTCGTTGTGCTCCCAGTGATAAGTATTTGGACAACATTCTTATAACTGGGCTTGACAAAGAGGTTCCTGAGACTAAAATTTTGGATATACTAAGATCTGCTACTAGTAGAAGGATTCTAGATTTTTTCTTTAAGAGAGGAGACGCTGTTGAAAATCCACCATGCAGTATGATTGCAGAGACAATATTAAAAGAAATCTCCCCCTTAATGCCCAAAAAAAAACCTCACATTAGTTCTTGCCGTGTTCAGGTGTTTCCACCTAAGCCGAAGGATTATTCGATGAATGCTTTAATTCATTTTGATGGAAGATTACATTTAGAAGCAGCAAAAGCTTTGGAGAAAATTGATGGAAAGGTGTTGCCCGGATTTCATTCTTGGCAGAAGATAAAGACCCAGCGTTTGTTTCACAGCACCTTGATATTTTCTCCTCCAGTGTATCATGTGATTAAGGGACAACTGGAAAAAGTGCTGGCACGTTTCAACAATTTAGAAGGTCTTGAGTGGAAACTAGACATAACTCCTAATGGCTCCCACCGAGTGAAAATAACAGCCAATGCCACAAAGACGGTGGCAGAAGGTAGGAGACTTCTGGAAGAACTGTGGAGAGGGAAAGTCATTGTCCACGACAACCTCACCCCTGCCACTCTACAGCCCATATTGTCCAAAGATGGTTCTAGTCTTACAAGCTCAATACAGAAAGCGACTTCAACTTACATTCAATTTGATAGGCGCAACATGAAGTTACGGATATTTGGTTCGCCGGACAAGATTGCTTTGGCTGAGAAAAAGTTAATTCAATCTCTCTTGTCCCTCCATGACGAAAAACAGTCAGTAATCTGTCTGAGTGGAAGGGACCTACCTTCTGATTTTATGAAGCAAGTGGTTAAGAATTTCGGGCCAGATCTTCATGGACTAAAAGAGAAGGTACCCGGGGCAGATCTTAGGCTTAACACACGCAACCGGACAATCCTTTGTCATGGTAACTCGGAGTTGAAATCAAGAGTGGAGGAAATAACTTTTGAGATTGCACGTTTAAGCAATCCTTCAAGCGAGAGATTTGACACTGGACCTAGTTGCCCAATTTGCTTGTGTGAGGTTGAGGATGGATATCAGCTTGAAGGTTGTGGTCATTTGTTCTGCCAGTCATGTATGGTGGAGCAGTGTGAATCTGCTATAAAAAACCAAGGCAGTTTCCCAATACGTTGTGCTCATCAGGGCTGTGGAAATCATATTTTGCTTGTAGATTTCAGAACTCTCCTGTCAAATGATAAGTTGGAAGAACTTTTCAGGGCTTCTTTGGGAGCTTTTGTAGCCTCAAGTTCAGGAACCTATAGGTTTTGTCCATCTCCTGACTGCCCCTCAATCTATAGAGTTGCAGATCCCGACACAGCTAGTGCGCCATTTGTTTGTGGGGCATGTTATTCAGAGACTTGTACCAGGTGCCATATAGAGTATCATCCGTACGTTTCATGTGAGAGATACCGACAATTCAAGGATGACCCGGATTCTTCTCTGAGGGATTGGTGCAAAGGGAAAGAACAAGTTAAGAATTGCCCGGCATGTGGGCATGTAATTGAGAAGGTAGATGGGTGCAATCACATTGAGTGCAAGTGTGGAAAACATATTTGCTGGGTTTGCTTAGAGTTCTTTACAACCAGCGGTGAATGTTATAGCCATATGGATACTATACACTTGGGCGTAGATTAA 5196 0.4136 MKKTFPTTNHRTTTRHDSYLRRQPPWRADHHWNPRFQSNHLYYRPRLPYFIVNLRLTHRLNLRREEIETLIADCKPNPDKFSFQPNESITASLNFNNGTDAISAVVWFWESRLSECRHELSPEFIEMNSDNSKHGDELKARLRSVFMSHVKELMEGKEINRWIKEWDRLSKEIKEVNSLLGKPFPVRVQDENIDRKKMLDGEKNLVEKRLKEFEYAMENILMYLEENNNNNDDDDDVNVIRFGERFDWEKICNFIVRERRRLEDGLPIYAYRKEILQQIYHQQITVLIGETGSGKSTQLVQFLADSGVGANESIVCTQPRRIAAKSLAERVREESGGCYEDSSIKCYSSFSSWNKFDSRIIFMTDHCLLQHYMSDKNFTGISCIIVDEAHERSINTDLLLALIKNLLSKRVEMRLIIMSATADAKQLSDYFYGCGIFRVPGRNFPVEVRYVPSEYEGRSHSSVVDPYVSDVVKMATEIHRTEKEGTILAFLTSQLDVEWACEKFEAPSAVALPLHGKLSSEEQFHIFKNYPGKRKVIFSTNVAETSLTIPGVKYVIDSGLVKDSRFDPSSGMNVLKVCWISQSSAKQRAGRAGRTEPGRCYRLYSEADYQSMETNQDPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSTSSIERAIGNLIQLGAIKLNNDVYELTPEGRRLARMEIEPRLGKLILGCFQYTLGREGIALAAMMANARSVFCRVGNEGDKQKSDCQKVQFCHCEGDLFTLLSVYMEWEVQPQNWKNKWCWENSINAKSMRRCQNTFLELESCLESELGLVVPSYWRWDPHNPSIHDKNMKKAILSSLSENVAMYSGRNQLGYIVAQTEKHVQLHPSCSLLVFSQRPSWVVFYELRSESNEYLFCVSAVDFQSLYSLKPPPLFDVSKMEEQKLQTKTLVGFGKHVLKRFCGKGNLLGHVSRIRKACMDERIFVDVNFDENHIQLYACSNDMNTASKLVNDVLQYEKKRLHTECMEKCLYHGFGSSSPVAMFGSGAEIKHLELEKLPLSVDVFHPNVNAIDEMELLMFFEKNTSGCICDMQKFTGMVKDVEDKAKWGKITFMTSNAAKRAAELDGEEFCGSPLKIVHSQSAMGGDTTFSFPAVEARISWLRRPIKAVGIIKCDKNDVDFIIRDFENLIVDGRRYVRCAPSDKYLDNILITGLDKEVPETKILDILRSATSRRILDFFFKRGDAVENPPCSMIAETILKEISPLMPKKKPHISSCRVQVFPPKPKDYSMNALIHFDGRLHLEAAKALEKIDGKVLPGFHSWQKIKTQRLFHSTLIFSPPVYHVIKGQLEKVLARFNNLEGLEWKLDITPNGSHRVKITANATKTVAEGRRLLEELWRGKVIVHDNLTPATLQPILSKDGSSLTSSIQKATSTYIQFDRRNMKLRIFGSPDKIALAEKKLIQSLLSLHDEKQSVICLSGRDLPSDFMKQVVKNFGPDLHGLKEKVPGADLRLNTRNRTILCHGNSELKSRVEEITFEIARLSNPSSERFDTGPSCPICLCEVEDGYQLEGCGHLFCQSCMVEQCESAIKNQGSFPIRCAHQGCGNHILLVDFRTLLSNDKLEELFRASLGAFVASSSGTYRFCPSPDCPSIYRVADPDTASAPFVCGACYSETCTRCHIEYHPYVSCERYRQFKDDPDSSLRDWCKGKEQVKNCPACGHVIEKVDGCNHIECKCGKHICWVCLEFFTTSGECYSHMDTIHLGVD* 1732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0343 1731 Pfam IBR domain, a half RING-finger domain 1598 1654 IPR002867 -
Mtr3g0343 1731 Pfam Zinc finger, C3HC4 type (RING finger) 1522 1553 IPR018957 GO:0046872
Mtr3g0343 1731 ProSiteProfiles TRIAD supradomain profile. 1518 1731 IPR044066 -
Mtr3g0343 1731 SMART ultradead3 264 449 IPR014001 -
Mtr3g0343 1731 Pfam Helicase conserved C-terminal domain 478 595 IPR001650 -
Mtr3g0343 1731 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 276 440 IPR014001 -
Mtr3g0343 1731 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 90 1483 - -
Mtr3g0343 1731 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1555 1647 - -
Mtr3g0343 1731 PANTHER ATP-DEPENDENT RNA HELICASE 1555 1647 - -
Mtr3g0343 1731 PANTHER ATP-DEPENDENT RNA HELICASE 90 1483 - -
Mtr3g0343 1731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 774 IPR027417 -
Mtr3g0343 1731 Gene3D - 640 745 - -
Mtr3g0343 1731 ProSitePatterns Zinc finger RING-type signature. 1538 1547 IPR017907 -
Mtr3g0343 1731 SMART ha2_5 656 752 IPR007502 GO:0004386
Mtr3g0343 1731 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 821 897 IPR011709 -
Mtr3g0343 1731 Gene3D - 443 616 IPR027417 -
Mtr3g0343 1731 Pfam Helicase associated domain (HA2) 657 751 IPR007502 GO:0004386
Mtr3g0343 1731 SUPERFAMILY RING/U-box 1521 1595 - -
Mtr3g0343 1731 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 470 636 IPR001650 -
Mtr3g0343 1731 SMART ibrneu5 1589 1654 IPR002867 -
Mtr3g0343 1731 SMART ibrneu5 1655 1719 IPR002867 -
Mtr3g0343 1731 Gene3D - 248 442 IPR027417 -
Mtr3g0343 1731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1519 1598 IPR013083 -
Mtr3g0343 1731 ProSitePatterns Zinc finger C2H2 type domain signature. 1706 1727 IPR013087 -
Mtr3g0343 1731 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 382 391 IPR002464 -
Mtr3g0343 1731 Gene3D - 1633 1727 - -
Mtr3g0343 1731 CDD DEXHc_RHA-like 283 439 - -
Mtr3g0343 1731 Pfam DEAD/DEAH box helicase 271 427 IPR011545 GO:0003676|GO:0005524
Mtr3g0343 1731 SMART helicmild6 498 596 IPR001650 -
Mtr3g0343 1731 CDD SF2_C_RHA 444 604 - -
Mtr3g0343 1731 SUPERFAMILY RING/U-box 1676 1724 - -
Mtr3g0343 1731 SUPERFAMILY RING/U-box 1604 1659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0343 Mtr-Chr3 3951098 3959227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0343 1538 1719 C3H Transcription Factor Family AT2G31770 28.272 1.22e-14 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0343 K12818 - gmx:100810008 2378.21