Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0341 ATGGCGTTATTTGGTAAAACGGGGAAGCTACTCAAGAATTCTGCTGTCAATCATGATTTATCTATGTCGGTATTTCAAGCAACTAGATCAATGTCATCTGCAAATCTTTTTCTAGGAGGTATTTCATATAATACTCTCCGAAAACATTTTTCTCTCTATGGGAAAGTTCTTGATGCAAAGATTATCAGAGATCGTGAAACAGGAAGGCCTCGAGGTTTTGGTTTTGTAACTTTTGCAACGACGGAGGAGGCATCTGCTGCCCTTCAGACCATGAGTCTTGCCATTAAGTCCATGAAAAACCAGGATCTTTATGGTCGGAAGGTACGAGTGAACTATGCTACAGAAAAGTCGGGTCCTGGGTTTAGTGGTGGTGGCTATCACAGCTGCCATCTCGAGACTACAGTAGAAACTCTTTAA 417 0.4173 MALFGKTGKLLKNSAVNHDLSMSVFQATRSMSSANLFLGGISYNTLRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTMSLAIKSMKNQDLYGRKVRVNYATEKSGPGFSGGGYHSCHLETTVETL* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0341 138 Gene3D - 13 128 IPR012677 -
Mtr3g0341 138 SUPERFAMILY RNA-binding domain, RBD 28 127 IPR035979 GO:0003676
Mtr3g0341 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 92 IPR000504 GO:0003723
Mtr3g0341 138 SMART rrm1_1 35 111 IPR000504 GO:0003723
Mtr3g0341 138 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 128 - -
Mtr3g0341 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 115 IPR000504 GO:0003723
Mtr3g0341 138 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0341 Mtr-Chr3 3939827 3941330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0341 27 118 C2H2 Transcription Factor Family AT2G19380 32.292 8.83e-11 56.6