Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0326 ATGGCTACCGCAAGGACTGTTCAAGATGTTTCTTCACACGAGTTTGTCAAAGCTTACTCTGCTCATCTCAAAAGATCTGGCAAGATGGAGCTTCCAGAATGGACCGATATTGTGAAGACTGCAAGGTTTAAGGAGTTGGCACCTTATGATCCTGACTGGTACTATGTCAGAGCTGCTTCCATTGCAAGGAAGATCTACTTGAGGGGTGGACTCGGTGTTGGTGCATTCCAGAGGATTTATGGTGGAAGTCAGAGGAATGGCAGTCGCCCACCTCATTTCTGCAAGAGCAGTGGTTCCATTGCTCGCCACATTCTTCAACAGTTGCAGAACATGAACCTTATTGAGATGGACACCAAGGGTGGCAGGAAGATCACTTCCAGTGGAAGGAGGGATTTGGACCAAGTTGCTGGACGTATTGTTATTGCTCCTTGA 432 0.4745 MATARTVQDVSSHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASIARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGSIARHILQQLQNMNLIEMDTKGGRKITSSGRRDLDQVAGRIVIAP* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0326 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 140 IPR036390 -
Mtr3g0326 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Mtr3g0326 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 143 IPR001266 GO:0003735|GO:0005840|GO:0006412
Mtr3g0326 143 PANTHER RIBOSOMAL PROTEIN S19E, WINGED HELIX-TURN-HELIX DNA-BINDING DOMAIN PROTEIN-RELATED 3 143 - -
Mtr3g0326 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Mtr3g0326 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Mtr3g0326 143 Gene3D - 1 142 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0326 Mtr-Chr3 3773217 3775143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0326 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 82.394 1.21e-90 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0326 K02966 - gmx:100499800 279.641