Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0311 ATGTCCACAGCCGAGCCACCATCTTCCACCACCATCACTACAACCGGCGTAGGTCTCGGCTACGGCATCACAATCGCCGTAAGCATCCTTGTCCTCATCTCCACCATCATGCTCGTTTCCTACCTTTGCGTCCGTATAAAATCACACGGACGCAGAGACTCCTTCCATCTCGACATCCACCATCAACCTCATACTACTATCAACTCGGGCTTGGCTCAGCCCGGTCCATTTATCATGGGCCTAGAAAAGCCCATGATTGAATCATATCCAAAGATGATACTTGGAGAGAGTAGAAGATTGCCCAAACCCAATGGTGGCCAGTGTGCTATTTGTTTGACTGATTATCTACCAAAGGAAACAATACGCTGTGTTCCAGATTGTCAACATTGTTTTCATGCAGATTGTGTTGATGAGTGGCTAAAAATGAGTGCCACGTGTCCTTTGTGTCGGAATTCTCCGGCTCCGTCGCCGATAACTACGCCTGTGGCCACGCCGTTGTCGGAGCTTGCTCCTCTGGCTTTTCATGCTAGATGGCTGTGA 540 0.4944 MSTAEPPSSTTITTTGVGLGYGITIAVSILVLISTIMLVSYLCVRIKSHGRRDSFHLDIHHQPHTTINSGLAQPGPFIMGLEKPMIESYPKMILGESRRLPKPNGGQCAICLTDYLPKETIRCVPDCQHCFHADCVDEWLKMSATCPLCRNSPAPSPITTPVATPLSELAPLAFHARWL* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0311 179 SMART ring_2 108 149 IPR001841 -
Mtr3g0311 179 CDD RING-H2_EL5_like 107 150 - -
Mtr3g0311 179 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Mtr3g0311 179 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 20 156 - -
Mtr3g0311 179 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 20 156 - -
Mtr3g0311 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 155 IPR013083 -
Mtr3g0311 179 Pfam Ring finger domain 107 150 IPR001841 -
Mtr3g0311 179 SUPERFAMILY RING/U-box 107 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0311 Mtr-Chr3 3579332 3580681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0311 1 177 C3H Transcription Factor Family AT5G07040 57.062 1.27e-65 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0311 - - lja:Lj3g3v0787250.1 258.455