Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0288 ATGAAGAAGAAGCTTGATACTCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTTCCTGTTTTAGTTTCAAAAGCTCTGGAATTATTTTTGCAAGATCTTTGTGACCGAACTTATGAAATAACTCTACAGAGAGGAGCAAAGACCATGAATGCATTGCATTTGAAACATTGTGTACAAAGCTACAACGTCTTTGACTTTTTGAGAGACATTGTCAGCAGGGTTCCTGACTATAGCCATGGACATGGCCATTCTGAGGCTGGGGCTGATGATCGCGCCGTTCCAAAGAGAAGGAAAGCTGCTGGTGATGATTGTAATGACAGCGATGAAGAGGCTAAGCGGAGTAAAATGCTTGAGTTGGGCCACACTGGCAGTACTGGTAGGGGAAGAGGAAGGGGTAGAGGAAGAGGCCGCGGTCGAGGGGCTCGAACTGCAGAAAGAGAAACCTTACATCAGCAGGTTGAATCTGAACCTTGCACTTCTATTCAGCAAACTAGCAAAGACGTCCCCAATACAAGTATGGCAATAGATAATGGTTCAGAACCAAAGGAGTTATCGAAGGAAAATATTGCAGCTCATGAAGAAAGTACCCAATCTCTCCGAAACATTGATCTGAATGCCAACTTACATGAAAACGAGGAAAAAAATAATACAAGCACGGATATACCTACTCAGGCCCCATTGCCTGAACCTGCTGCAACAACAGATATGCAACATGAAGAAATTCCAGGTTGGTCTCTTTCTGATGTTGACAAGATGGCGATTGACACACTGCAGCTTGCAGCGAATCTTGGTAATAGGCTAGATGAGGATGAGGAAGATTATGATGAGGAGGAAGAGTAG 879 0.4414 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYSHGHGHSEAGADDRAVPKRRKAAGDDCNDSDEEAKRSKMLELGHTGSTGRGRGRGRGRGRGRGARTAERETLHQQVESEPCTSIQQTSKDVPNTSMAIDNGSEPKELSKENIAAHEESTQSLRNIDLNANLHENEEKNNTSTDIPTQAPLPEPAATTDMQHEEIPGWSLSDVDKMAIDTLQLAANLGNRLDEDEEDYDEEEE* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0288 292 SUPERFAMILY Histone-fold 3 99 IPR009072 GO:0046982
Mtr3g0288 292 MobiDBLite consensus disorder prediction 151 165 - -
Mtr3g0288 292 PANTHER HISTONE SUPERFAMILY PROTEIN 1 290 - -
Mtr3g0288 292 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Mtr3g0288 292 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Mtr3g0288 292 MobiDBLite consensus disorder prediction 166 191 - -
Mtr3g0288 292 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 290 - -
Mtr3g0288 292 MobiDBLite consensus disorder prediction 90 199 - -
Mtr3g0288 292 MobiDBLite consensus disorder prediction 90 130 - -
Mtr3g0288 292 MobiDBLite consensus disorder prediction 225 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0288 Mtr-Chr3 3204121 3209036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0288 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.864 1.89e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mtr3g0288 CBFD_NFYB_HMF 1.4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0288 K21752 - gmx:100810093 415.616