Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0286 ATGGCATCCCAATCCTCAAGGGTGTCTGCCACTTCAGAAGATCAAGGTGATTCATCCAACTCAAAAAAAGAGGTGATCATGAAGGAGATTGAACATGATCAACCCTCAAACTCTAATCCCAACAAGTCTATTGATTTCGTTAAGCTATCCAAAGACGATTCAGTTCTCGGGTCGGAGGTGCAAGAACACAACTTTTTCGGCCCTATTCAAGGTGGTTCATCATATTTTTTTCGTAATAACAACAATGAAGGGAAAGATGAGAACAACAATGCTGAGAACAATTCAGATTCAAAGTCTTTTTCATGTTGTTTTTGCAAGAGAAAATTTTCTACATCACAAGCGTTAGGAGGACATCAGAATGCCCATAAGGCTGAACGTGCCTTAGAAAAACAACGTAAACAAAAGTATGAAAATGGTGTTTTTGGTTTAGGGCAACCTTACTTTAACCCTTATTTTAGTTATCCAAATACTCTTTTTACACCCTCTTATTATAAGGGGCTTGGAACTAGAATGGAATCCATGATTCAAAAGCCATCTTATATTAACCCTAGGATTACTCCACATAGTTTTGGCCCTTTTGGGTATGATAATGGTGCTTTATCTTTGCAAGAGATATTAAACCCTTCACTTGTTAGTTTGAGAAATAAGAATCATGGGGTTGGAATTCTTGGTATTGGTGGTGCAAGTACTTCAAGGATAGAAGATGGTACAAATAATAAAATTGGTGCTATTCTAAAATTAGGAGATTCTTCTACAAATGTTGCTACAAGTTCAAACTCAAAGGTAGAAAAAGATATCATTGTGGCTCCTATTTCTTCCAATAATGATATTCATGATCAATCAAAGTCCAAGTCCAACAATGAAGAAGAACCCTCTGATTCTGAATCTTTTGAGCTTGATTTATCACTCAAGCTTTAA 918 0.3627 MASQSSRVSATSEDQGDSSNSKKEVIMKEIEHDQPSNSNPNKSIDFVKLSKDDSVLGSEVQEHNFFGPIQGGSSYFFRNNNNEGKDENNNAENNSDSKSFSCCFCKRKFSTSQALGGHQNAHKAERALEKQRKQKYENGVFGLGQPYFNPYFSYPNTLFTPSYYKGLGTRMESMIQKPSYINPRITPHSFGPFGYDNGALSLQEILNPSLVSLRNKNHGVGILGIGGASTSRIEDGTNNKIGAILKLGDSSTNVATSSNSKVEKDIIVAPISSNNDIHDQSKSKSNNEEEPSDSESFELDLSLKL* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0286 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Mtr3g0286 305 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Mtr3g0286 305 PANTHER ZINC FINGER PROTEIN JAGGED 72 305 IPR045320 GO:0003700
Mtr3g0286 305 MobiDBLite consensus disorder prediction 17 31 - -
Mtr3g0286 305 MobiDBLite consensus disorder prediction 270 305 - -
Mtr3g0286 305 MobiDBLite consensus disorder prediction 1 16 - -
Mtr3g0286 305 Gene3D Classic Zinc Finger 83 141 - -
Mtr3g0286 305 PANTHER ZINC FINGER PROTEIN KNUCKLES 72 305 - -
Mtr3g0286 305 SUPERFAMILY beta-beta-alpha zinc fingers 96 128 IPR036236 -
Mtr3g0286 305 MobiDBLite consensus disorder prediction 1 45 - -
Mtr3g0286 305 MobiDBLite consensus disorder prediction 281 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0286 Mtr-Chr3 3189387 3190304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0286 93 155 C2H2 Transcription Factor Family AT5G01860 49.206 2.30e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0286 - - mtr:MTR_3g011970 342.813