Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0285 ATGAAGGAGATTGAACATATTCAATCCTCAAACACAAAACCCGACAATCCCATTGATTTCATGAAGCCGTCAAAAGACGATCCAGTTCCCGTGTCGAAGGTGCAAGAGCACAATTTTTTCGGCCCCATTCAAATTGGTTCATCGTCTTGTTTTCCTAATGATAACAATCAAGGAAAAGATGAGAACATCAATGAAGAGAAGAATTCGGATTCAAGGTCTTTTTCATGCTCCTTTTGTAAGAGACAATTTTCTACTTCACAAGCGTTGGGAGGACACCAGAACGCTCATAAGGCGGAACGTGCTTTAGAAAAGCAACGGAAACAAAGGTATGATGACAGTGCTTCAAGTTTGGGGCAATCTTACTTTTATCCTACTCTTTTTCGACCTTACGATTATAGGTCACTCGGGGTCAGAACCGAGTCAATGATTCAAAAACCACCTTATATTAGCCCTAAGATTACCCCACACAGTTTTGGGTACCGTCATAGTGCTTTGTTGCAAGAGATCTTAAACCCTTCTCTTGTGTCATTGAGAAATATGAGGGGTGGTAACAGCGGGTTTGGAAACCTAGCTATTGGTGGTGCAAGTACTTCAAGGATTGAAGATGGTACAAATAATAAAATAGGTGCTATTCTAAAATTAGGAGATTCTTCTACAAATGTTGCTGCAAGTTCAAACTCAAACATAGAAAAGCAAATTATTGTGGCTCCTACTTCTACCAAAGATGATATTCATGATCAATCAAAGTCTAACATTGAAAAAGAACCTTCTGATTCTGAATCATCTGAGCTTGATTTATCACTCAAGCTTTAA 813 0.3887 MKEIEHIQSSNTKPDNPIDFMKPSKDDPVPVSKVQEHNFFGPIQIGSSSCFPNDNNQGKDENINEEKNSDSRSFSCSFCKRQFSTSQALGGHQNAHKAERALEKQRKQRYDDSASSLGQSYFYPTLFRPYDYRSLGVRTESMIQKPPYISPKITPHSFGYRHSALLQEILNPSLVSLRNMRGGNSGFGNLAIGGASTSRIEDGTNNKIGAILKLGDSSTNVAASSNSNIEKQIIVAPTSTKDDIHDQSKSNIEKEPSDSESSELDLSLKL* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0285 270 Pfam C2H2-type zinc finger 74 98 - -
Mtr3g0285 270 MobiDBLite consensus disorder prediction 1 69 - -
Mtr3g0285 270 PANTHER ZINC FINGER PROTEIN JAGGED 45 270 IPR045320 GO:0003700
Mtr3g0285 270 MobiDBLite consensus disorder prediction 242 270 - -
Mtr3g0285 270 PANTHER ZINC FINGER PROTEIN KNUCKLES 45 270 - -
Mtr3g0285 270 MobiDBLite consensus disorder prediction 41 58 - -
Mtr3g0285 270 SUPERFAMILY beta-beta-alpha zinc fingers 71 102 IPR036236 -
Mtr3g0285 270 MobiDBLite consensus disorder prediction 89 114 - -
Mtr3g0285 270 MobiDBLite consensus disorder prediction 236 270 - -
Mtr3g0285 270 MobiDBLite consensus disorder prediction 96 111 - -
Mtr3g0285 270 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Mtr3g0285 270 Gene3D Classic Zinc Finger 55 121 - -
Mtr3g0285 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0285 Mtr-Chr3 3178838 3179650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0285 63 146 C2H2 Transcription Factor Family AT5G10970 47.674 8.24e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g0285 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0285 - - mtr:MTR_3g011970 377.867