Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0280 ATGATCAGAAACTGTAATTGTAGCAGCAGAAGAATGCTTCATCTATGGTTATTTACCATTAAATTGATATACCTTTTCTATATTGTTGTAGGCCAAAACAATAGCAATTCACAAGAACTACTTGAATATAGATATGCATGTTTGGACCAATCTTCTACTCCTCCCTCTACCACATACCAAACCAACCTCAACAATTTAATCTCTTCATTATCATCAGATTCTGCTTCCAGCAATGGTTTTGGAAATAGTACTTCAGGTGATAATCAAAACAACATGGTTTATGGACAGTACCTTTGTCGTGGCGATGTTAATACAAGTCTTTGTCATTCATGTGTTCAAAACTCTAGCAGATTGCTCAAACAACACTGTCCTAATAATGCATCAGCAATTTTGTGGTACCCTTTTTGTCTTCTAAGGTACTCAAATAAGAATTTCTTTGGTAACCTTACTATAAGACCAAGGATTCCTATGTTTGATGTAGCACAAAATTTAACTAGTGCTGGTGAATTTGATAGTGATGCTAGGGTTTTGATGAATGGTTTGATACAAATGGGATCACAAACACCATTGATGTTTGGAACACATATGTTTAACATAAATGGTACTCAAAGAAGGTATGGTTGGGTACAGTGTAGCAGAGATATTACTAGCGAGGAATGCAGAACTTGTTTGAGCAATATGCTTGAGGATGTTGAAAATTGTTGTATGGAGAAGAAAGTGTGGAGAATCTTTTCTCCAAGTTGTATTGTCATGTATGAAACTCAGCCATTCTTTGTGAATGGTACAGTTTCTGAAGCTCCTGTGCCTCAACAAGCTAATGAAAAGGATGGCACAAGGTCATGGATAATAATAATCATTGTTGTAATTGGAGCAGTAGTAGCAGCTCTAGTGGTTTTCAGCACATACTATTTCTGGTGCTTGAAACATCGAAAAAAGAGAAATTTTATGCAAGGCCATAGTCGAATATTTTCTCAAGATCAGACTGACATTGAGAAGACTGGAAATACTGACCTACCTATGATGCCTCTGAGTACTATTCTAAAAAGTACTAATAATTTTTCCGATGAATATAAATTAGGGAAAGGTGGATTTGGAACTGTCTACAAGGGTGTTCTAGCAGATGAAAAGGAAATTGCTGTTAAAAGGCTTTCAAAAACTTCTTCTCAAGGTGTGGAGGAATTAAAAAATGAAATAATATTGATTGCCAAATTGCAGCATCGAAACCTTGTCAGACTATTGGCTTGCTGCATCGAGCAAAATGAAAAGCTTCTTATCTATGAATACTTGCCTAATTCAAGCCTTGATTTCCACCTATTTGATATGGTGAAGGGTGCACAACTAGCTTGGAGACAGAGATTAAATATTATTAATGGGATTGCTAAAGGGCTTCTATATCTTCATGAGGACTCTAGGCTCAGAGTTATTCACAGAGACCTGAAAGCTAGCAATATTCTATTAGATCAAGAAATGAATCCAAAAATCTCAGATTTTGGACTTGCAAGAACATTTGGAGGAGACCAAGATGAAGCAAATACAATTAGAGTTGTAGGAACTTATGGATATATGGCTCCAGAATATGCTATGGAAGGATTGTTTTCAGTAAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCATCAGTGGAAGAAAAAACAGTAAATTCTATCTTTCAGAGCATGGGCAAAGCCTTCCCATATTTGCATGGAACCTTTGGTGTAAAAGAAAAGGCTTCGAACTGATGGATCCATCGATTGAAAAGTCGTGTGTACCTAGTGAATATCTGAAGTTTTTACATATCGGACTATTGTGTGTACAAGAAGATGCAGCAGATAGACCTACAATGTCAAGTGTTGTTCACATGCTTGCAGGTGACACGGTGACTCTTCCAAGCCCTACACGCCCTGCATTTTCTGTTGGTAGAGCTAGAGCTATCGTTGACCGAGAATCTTCGTCAAACACTTCTATCTCTGCCAATGAAGTAACCTTGTCTGAATTGATGCCTAGATGA 2016 0.3715 MIRNCNCSSRRMLHLWLFTIKLIYLFYIVVGQNNSNSQELLEYRYACLDQSSTPPSTTYQTNLNNLISSLSSDSASSNGFGNSTSGDNQNNMVYGQYLCRGDVNTSLCHSCVQNSSRLLKQHCPNNASAILWYPFCLLRYSNKNFFGNLTIRPRIPMFDVAQNLTSAGEFDSDARVLMNGLIQMGSQTPLMFGTHMFNINGTQRRYGWVQCSRDITSEECRTCLSNMLEDVENCCMEKKVWRIFSPSCIVMYETQPFFVNGTVSEAPVPQQANEKDGTRSWIIIIIVVIGAVVAALVVFSTYYFWCLKHRKKRNFMQGHSRIFSQDQTDIEKTGNTDLPMMPLSTILKSTNNFSDEYKLGKGGFGTVYKGVLADEKEIAVKRLSKTSSQGVEELKNEIILIAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFHLFDMVKGAQLAWRQRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDQEMNPKISDFGLARTFGGDQDEANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGRKNSKFYLSEHGQSLPIFAWNLWCKRKGFELMDPSIEKSCVPSEYLKFLHIGLLCVQEDAADRPTMSSVVHMLAGDTVTLPSPTRPAFSVGRARAIVDRESSSNTSISANEVTLSELMPR* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0280 671 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 44 668 - -
Mtr3g0280 671 Gene3D Transferase(Phosphotransferase) domain 1 429 630 - -
Mtr3g0280 671 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 44 668 - -
Mtr3g0280 671 ProSiteProfiles Gnk2-homologous domain profile. 41 145 IPR002902 -
Mtr3g0280 671 SUPERFAMILY Protein kinase-like (PK-like) 336 624 IPR011009 -
Mtr3g0280 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Mtr3g0280 671 Gene3D - 157 257 IPR038408 -
Mtr3g0280 671 Gene3D - 41 145 IPR038408 -
Mtr3g0280 671 ProSiteProfiles Gnk2-homologous domain profile. 152 257 IPR002902 -
Mtr3g0280 671 Pfam Protein tyrosine and serine/threonine kinase 357 624 IPR001245 GO:0004672|GO:0006468
Mtr3g0280 671 CDD STKc_IRAK 359 624 - -
Mtr3g0280 671 SMART serkin_6 353 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g0280 671 ProSiteProfiles Protein kinase domain profile. 353 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g0280 671 Pfam Salt stress response/antifungal 52 142 IPR002902 -
Mtr3g0280 671 Pfam Salt stress response/antifungal 163 254 IPR002902 -
Mtr3g0280 671 Gene3D Phosphorylase Kinase; domain 1 315 428 - -
Mtr3g0280 671 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0280 Mtr-Chr3 3117571 3122785 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0280 45 639 Receptor kinase-like Gene Family AT4G05200 40.946 4.84e-164 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr3g0280 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0280 - - gmx:100798691 1033.09