Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0275 ATGGGTTTTGAACCATTGGTTTGGTACTGCAAGCCAGAACCAAACAGTATTTGGTCTAAAACAGTAGATAGTGCTTTTGGGTCATATACACCATGTGCAATTAACACTCTTGTTATCTCAACCTCAAATTTGGTTCTTATGGGGCTGTGTTTATATAGAATATGGCTTATTATTTTCAATGCCAAAGCTCAAAGGTTTTGTTTGAAAACAAATTACTATAGTTATATTCTTGCAATGTTGGCTAGTTATTGTGCTTTTCAGCCTTTGTTGAGATTGTGGACTGGAAATTCAGCCTTCAACCTGAATGAGGAGACTGTTTTTGCTCCTTTTGAGGTAACAGGTCTGATCATTGAATCACTTACTTGGTTCTCAATGATAATTCTCATCCTCTTAGAAACCAAGGTTTATATTAGGCAATTTAGGTGGTTGGTGAGGTTTGGAGTTATTTATGTTTTGGTGGGAGATATTGTAATGCTTGAACTTGTTCTGTCTGTGAAAGATTACTCTAGCAGATCTGCCCTATATCTGTATATTAGCACTGTTATCTGTCAGGTGTTGTTTGGTATCTTACTTATAGTTTACATTCCTAATTTGGTTCCATATTCTGGTCATACAACATTCCAAGCTGACATACCTAACAATGGTGAATATGAACCACTTTGTGGAGATGATCAAGTTTGCCCTGAGATGCGCGCCAGTTTCTTATCTAGATTAAGTTTTGGATGGATAACTCCACTCATGAAACAAGGCTACCGAAAACCTATCACTGAAAAGGACGTTTGGAAGCTAGACAAATGGGACCAAACAGACACATTAAGTGAAAAGTTCCAAAAGTGTTGGGTGTCAGAATTTCAAAGCTCTAACCCTTGGCTTTTAAGAGCATTAAACAACAGCTTAGGGAAAAGGTTTTGGTTTGGAGGCATCTATAAGATTGGTTATGATCTTTCTCAATTGGTTGCGCCGATTTTGCTGAACCATCTCTTAGATTCAATGCAAAATGGAGATCCGTCTTGGATTGGTTACGTCTGTGCCTTCTCGATATTTGTTGGAGTGTCAGTTGGTATTCTATGTGAGACACAATATTTCCAGAATGTTATGCGCGTTGGTTTTCGACTGAGATCAACATTGGTGGCTGCTATATTTAGAAAGTCTTTGAGGCTAACTCATGAAAGTAGAAAAAAGTTCTCATATGGGAAGCTTATGAATATGATAGCAACAGATGCCAATGCATTACAGCAAATATGTCAACAACTTCATGGACTATGGTCAGCACCATTTCGCATCATCATAGCTATGGTTCTCCTATACCAACAACTAGGTGTTGCTTCACTTGTTGGCTCACTAATGCTAGTTCTCATTATTCCATTACAGACATTTGTGATTGGCAAAATGAAAAAATTGACAAAGGAAGGACTGCAACAGACAGACAAAAGGGTTGGTCTGATGAATGAAATTCTTTCTACTATGGATACAGTAAAATGTTATGCATGGGAAACAAGCTTTCAGTCTAGAATTCAAAGCATTCGACATGAAGAACTTTCATGGTTCCGCAAAGCATATCTTCTCTATGCTTTAAACAGTTTTATATTGAACAGCATTCCAGTTCTTGTGACAGTAACTTCCTTTGGAATGTTTACATTACTCGGTGGAGAATTAACACCTGCAAGAGCATTCACCTCACTATCTCTGTTTACGGTTTTGCGTTCTCCTTTAAATAGTCTTCCAAATTTACTAAATCAGGTAGCAAATGCAAATGTGTCATTGCAACGTTTGGAGGAACTGTTTTTGGCCGAGGAACGGAATTTAAAACAAAATCCACCAATTGTTCCAGGACTTCCAGCCATCTCAATAAAGAATGGATACTTTTCATGGGATCCTAAGGAAGAGAAGAAGCCCACATTATCAAATATAAATGTTGAAATACCAGTTGGAAGCTTAGTTGCAATCATTGGAGGTACTGGAGAAGGGAAAACATCACTTATTTCAGCAATGCTTGGAGAGCTACCTCTTGTATCTGATGGAAATGCTACAATCAGAGGGACTGCAGCTTATGTTCCGCAGATTTCATGGATTTATAATGCTACAGTTCGTGACAATATATTATTCGGTTCAAATTTCGACCATGGACGATATTTGAAGGCTATTGATGTCACTTCCTTGGAGCATGATCTCAACTTTTTACCTGGCCGTGATTTTACAGAGATTGGAGAAAGAGGAATCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCTTTAGCTAGGGCTGTATACTCAAATTCAGATGTATATATATTTGATGATCCTTTGAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGGCTGCAAGGAAAAACCAGAGTTCTTGTTACCAACCAGCTTCATTTTCTCCCTCAGGTGGATAAAATTATTCTGGTTAGTGAAGGCATGATTAAGGAGCAAGGAACGTTTGAGGAGTTGTTGAAATGTGGGCCTCTATTTCAGAAACTAATGGAAAATGCCGGGAAAATGGAACAAGAAGTAGATGGTCAAGACACAAATGATGTTTTACCTTTGGATAATGGGACAATTGTAGAGTTGGCAAATGATTTAAGCTATGGGAAGAAGGGAAAATTTCAAAAATCAGTACTTGTTAAGCAAGAAGAGCGGGAGACAGGCGTGGTTAGCTGGAAAGTTTTAATGAGGTACACATCTGCTTTGGGAGGAATATGGGTAGTTTCTATACTTCTTGCATGCTACACATTAACAGAAGCTCTTCGAATTTCGAGTAGTACATGGTTAAGTGTGTGGACATCTCAAGATTCAACTGCAGCTTCTCGTGCCGGATATTTTCTTTTCATCTATGCAATATTCTCATTTGGACAGGTATCTGTGGCACTTGCAAACTCTTATTGGTTGATCACTGCAAGTCTTCGTGCTGCAAAACGATTGCACGATGCAATGCTAGATAAAGTTCTACGTGCCCCAATGATATTCTTCCAGACTAATCCTGTCGGCCGCATGATTAATAGATTTGCAAAAGACACAGGGGACATAGATTCCAATGTTTATAATTTGGTGAATATTGTTCTAGGACAACTCTGGCAACTACTTTCAACATTTGTTCTTATAGGCACTGTCAGCACCATATCCCTGTGGGCCATAATGCCACTTCTGATATTTTTCTATGTTGCTTATATTTACTACCAGAGCACATCTCGAGAAGTGAAGCGCATGGATTCCATTACAAGATCGCCAGTTTATGCACATTTTGGAGAATCAATGAATGGTGTGTCAAGCATTCGTGCTTACAAGGCATACGACAGGATATTACACGACAATGGAAAATTCATGGATAACAATATCAGATTTACTCTTGCAAATATTAGTACAAACCGTTGGTTAACCATAAGGTTAGAAAGTTTAGGTGGCCTCATGATTTGGTTGATAGCAACATTTGCTGTGTTACAAAATGCACGATCTGAAAACCCTACATTGGTTGCATCTACAATGGGACTACTTCTCAGCTACACATTGAACATAACAAGTATTATGAGTAGCACACTTAGACAAGCAAGTAAAGCTGAAAACAGTTTAAATTCGGTTGAGCGCGTTGGAACATATATAGATTTAGAAGCCGAGGGTCAAAGTATAATTGAGACGAACCGTCCACCACCAGGATGGCCAACAAAAGGATCAATTGAGTTTGAGAATGTTGTTTTGAGCTATAGGCCGGAACTTCCTCCGGTCTTGCATGGATTGTCCTTTGTAGTGTCTTCAATGGAGAAAATAGGTGTAGTTGGAAGAACTGGTGCAGGAAAGTCTAGCATGCTTAATGCGTTATTTCGGATTGTGGAACTACAAAGTGGAAGAATCATTATTGATGGATGTGATATTTCTACGTTCGGACTAGCAGACTTGAGAAGAGTTCTTACTATCATACCACAGTCCCCCGTTCTTTTCTCTGGAACTGTTCGTTTCAATCTTGATCCATTTAATGAATACAACGATGCTGACGTATGGGAAGCTTTGGAAAGGGCACACATGAAGGATGTAATCAGAAGAAATCAATTTGGTCTATTTCTTGTTTGCATAAAACTCGTTCTAAGCTTATGTTGA 4119 0.3865 MGFEPLVWYCKPEPNSIWSKTVDSAFGSYTPCAINTLVISTSNLVLMGLCLYRIWLIIFNAKAQRFCLKTNYYSYILAMLASYCAFQPLLRLWTGNSAFNLNEETVFAPFEVTGLIIESLTWFSMIILILLETKVYIRQFRWLVRFGVIYVLVGDIVMLELVLSVKDYSSRSALYLYISTVICQVLFGILLIVYIPNLVPYSGHTTFQADIPNNGEYEPLCGDDQVCPEMRASFLSRLSFGWITPLMKQGYRKPITEKDVWKLDKWDQTDTLSEKFQKCWVSEFQSSNPWLLRALNNSLGKRFWFGGIYKIGYDLSQLVAPILLNHLLDSMQNGDPSWIGYVCAFSIFVGVSVGILCETQYFQNVMRVGFRLRSTLVAAIFRKSLRLTHESRKKFSYGKLMNMIATDANALQQICQQLHGLWSAPFRIIIAMVLLYQQLGVASLVGSLMLVLIIPLQTFVIGKMKKLTKEGLQQTDKRVGLMNEILSTMDTVKCYAWETSFQSRIQSIRHEELSWFRKAYLLYALNSFILNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFTVLRSPLNSLPNLLNQVANANVSLQRLEELFLAEERNLKQNPPIVPGLPAISIKNGYFSWDPKEEKKPTLSNINVEIPVGSLVAIIGGTGEGKTSLISAMLGELPLVSDGNATIRGTAAYVPQISWIYNATVRDNILFGSNFDHGRYLKAIDVTSLEHDLNFLPGRDFTEIGERGINISGGQKQRVSLARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEGLQGKTRVLVTNQLHFLPQVDKIILVSEGMIKEQGTFEELLKCGPLFQKLMENAGKMEQEVDGQDTNDVLPLDNGTIVELANDLSYGKKGKFQKSVLVKQEERETGVVSWKVLMRYTSALGGIWVVSILLACYTLTEALRISSSTWLSVWTSQDSTAASRAGYFLFIYAIFSFGQVSVALANSYWLITASLRAAKRLHDAMLDKVLRAPMIFFQTNPVGRMINRFAKDTGDIDSNVYNLVNIVLGQLWQLLSTFVLIGTVSTISLWAIMPLLIFFYVAYIYYQSTSREVKRMDSITRSPVYAHFGESMNGVSSIRAYKAYDRILHDNGKFMDNNIRFTLANISTNRWLTIRLESLGGLMIWLIATFAVLQNARSENPTLVASTMGLLLSYTLNITSIMSSTLRQASKAENSLNSVERVGTYIDLEAEGQSIIETNRPPPGWPTKGSIEFENVVLSYRPELPPVLHGLSFVVSSMEKIGVVGRTGAGKSSMLNALFRIVELQSGRIIIDGCDISTFGLADLRRVLTIIPQSPVLFSGTVRFNLDPFNEYNDADVWEALERAHMKDVIRRNQFGLFLVCIKLVLSLC* 1373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0275 1372 ProSitePatterns ABC transporters family signature. 742 756 IPR017871 GO:0005524
Mtr3g0275 1372 SUPERFAMILY ABC transporter transmembrane region 289 591 IPR036640 GO:0005524|GO:0016021
Mtr3g0275 1372 CDD ABCC_MRP_domain1 615 816 - -
Mtr3g0275 1372 Pfam ABC transporter 1251 1352 IPR003439 GO:0005524
Mtr3g0275 1372 Pfam ABC transporter 634 769 IPR003439 GO:0005524
Mtr3g0275 1372 Gene3D - 599 877 IPR027417 -
Mtr3g0275 1372 CDD ABC_6TM_ABCC_D2 913 1209 IPR044726 GO:0140359
Mtr3g0275 1372 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 840 IPR003439 GO:0005524
Mtr3g0275 1372 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr3g0275 1372 Pfam ABC transporter transmembrane region 305 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr3g0275 1372 Pfam ABC transporter transmembrane region 915 1163 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr3g0275 1372 Coils Coil 574 594 - -
Mtr3g0275 1372 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Mtr3g0275 1372 Gene3D - 1217 1364 IPR027417 -
Mtr3g0275 1372 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 38 1360 - -
Mtr3g0275 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1359 IPR027417 -
Mtr3g0275 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 839 IPR027417 -
Mtr3g0275 1372 SUPERFAMILY ABC transporter transmembrane region 914 1214 IPR036640 GO:0005524|GO:0016021
Mtr3g0275 1372 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 915 1197 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr3g0275 1372 SMART AAA_5 1260 1364 IPR003593 -
Mtr3g0275 1372 SMART AAA_5 643 823 IPR003593 -
Mtr3g0275 1372 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 38 1360 - -
Mtr3g0275 1372 Gene3D ABC transporter type 1, transmembrane domain 878 1215 IPR036640 GO:0005524|GO:0016021
Mtr3g0275 1372 Gene3D ABC transporter type 1, transmembrane domain 283 598 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0275 Mtr-Chr3 3036173 3064046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0275 615 832 Calmodulin-binding Proteins AT2G36910 27.706 3.46e-21 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0275 - K05665 mtr:MTR_3g011840 2517.27