Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0270 ATGATGCTAATGATTCATCAAGCAGTGTCCAAGTCTTCTTCATCTACCGATCTATTCACATCCGGAGTTTCAAGTCAGTGCAGTACTGATGCAGCTACTTCTGGTCTTGGAAGTTCACAGTATGTCCTTCAAAAATGCCACGTGGGGGATTTTGTTCCAGAACAAGAAAAACAAGGGAGACAATCGCTATTTCATATTTCTGGAAGTCAAGAAATAATCCAAACAGAAGTAAATCAAAAGGCGATACAAATTGAGAATGAAATAGTTCATATGGAGGCAGACTTTACATTTCCAGTTTGTTCTGTATGCAACAATAAAAGACTGAAAATTGGATCCAAGAGAGACTTTAGTTATATAGAACTCTATACTGCTACACAAGGATTTTCTGCCAAGAACTTTCTGTCAGAAGGTGGGTTTGGATCTGTCTACAAAGGACAAGTTAATGGAATGACAATTGCTGTTAAGCAACATAAAAGTGCAAGCTTCCAAGGAGAGAAGGAATTTAGGTCTGAAGTTAATGTACTTAGAAAAGCAAGACATGAGAATGTTGTCATGCTTTTAGGTTCATGTTCAGAAGGAAATAATCGACTTCTTGTTTATGAGTATGTCTGCAATGGCTCACTTGATCAACATCTATCAGAACACTCTAGATCACCTCTTACTTGGGAAGATAGGATCAAAGTAGCTATTGGAGCTGCCAGAGGCTTACTATACCTGCACAAAAATAACATAATACACAGAGATGTCAGACCAAACAATATCCTTGTAACACATGATCTTCAACCATTGATTGGAGATTTTGGACTAGCACGAACTCACAACAAAGACTTGACACACTCAACTGAAGTTGTTGGTACCTGGGGTTATTTGGCACCAGAATATGCAGAATATGGCAAGGTGTCAAGTAGAACAGATGTATATTCTTTTGGAGTGGTCCTATTACAGCTTATTACTGGAATGAGAACTACAGACAAAAGACTTGGAGGAAGAAGCCTTGTTGGATGGGCAAGGCCTCTTTTAAGAGAGAGAAATTATCCAGATCTAATTGATGAAAGGATCATTGATACTCATGATTACCATCAATTATTTTGGATGATAAGACTAGCTGAGAAATGTCTAAGCAGGGACCCTAAAAAAAGACTAAGTATGGTTGCGGTTGTTAATGCTTTGACGGACATATCGGAAGGCAACACATGTGACATTGGAACAGGAGATTACTCCCCAGCAAGATCAGATTCATCCTATAGTGAATCAGAATTTGATGAAAATGATGAGAATGAACCCTTTGAGCAAGGTGAATTACTAAGAACTATTTCAGAATCCACAGAAAGCAATGAATACATAAGTCAGATGAGGCATATGACTGTGAGGCAGCCACCATCCCCTCCCATTAAAAGCATCTGTTCAAGTGGCTCAAGCTCATTTCAGTTTTCTGATGAATCTAGTGATTATGAAGCACATAACAGAAGTAACACAGAAATGCCTACATATAAAATGGGTTTACTCAACTCTTAG 1515 0.3835 MMLMIHQAVSKSSSSTDLFTSGVSSQCSTDAATSGLGSSQYVLQKCHVGDFVPEQEKQGRQSLFHISGSQEIIQTEVNQKAIQIENEIVHMEADFTFPVCSVCNNKRLKIGSKRDFSYIELYTATQGFSAKNFLSEGGFGSVYKGQVNGMTIAVKQHKSASFQGEKEFRSEVNVLRKARHENVVMLLGSCSEGNNRLLVYEYVCNGSLDQHLSEHSRSPLTWEDRIKVAIGAARGLLYLHKNNIIHRDVRPNNILVTHDLQPLIGDFGLARTHNKDLTHSTEVVGTWGYLAPEYAEYGKVSSRTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLRERNYPDLIDERIIDTHDYHQLFWMIRLAEKCLSRDPKKRLSMVAVVNALTDISEGNTCDIGTGDYSPARSDSSYSESEFDENDENEPFEQGELLRTISESTESNEYISQMRHMTVRQPPSPPIKSICSSGSSSFQFSDESSDYEAHNRSNTEMPTYKMGLLNS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0270 504 CDD STKc_IRAK 134 393 - -
Mtr3g0270 504 SUPERFAMILY Protein kinase-like (PK-like) 111 390 IPR011009 -
Mtr3g0270 504 MobiDBLite consensus disorder prediction 456 504 - -
Mtr3g0270 504 SMART tyrkin_6 128 390 IPR020635 GO:0004713|GO:0006468
Mtr3g0270 504 PANTHER TYROSINE KINASE FAMILY PROTEIN 48 419 - -
Mtr3g0270 504 MobiDBLite consensus disorder prediction 488 504 - -
Mtr3g0270 504 Gene3D Phosphorylase Kinase; domain 1 100 202 - -
Mtr3g0270 504 MobiDBLite consensus disorder prediction 398 430 - -
Mtr3g0270 504 Gene3D Transferase(Phosphotransferase) domain 1 203 403 - -
Mtr3g0270 504 ProSitePatterns Tyrosine protein kinases specific active-site signature. 244 256 IPR008266 GO:0004672|GO:0006468
Mtr3g0270 504 Pfam Protein tyrosine and serine/threonine kinase 131 389 IPR001245 GO:0004672|GO:0006468
Mtr3g0270 504 MobiDBLite consensus disorder prediction 456 481 - -
Mtr3g0270 504 PANTHER OS01G0253100 PROTEIN 48 419 IPR045271 GO:0004714|GO:0006468
Mtr3g0270 504 ProSiteProfiles Protein kinase domain profile. 128 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0270 Mtr-Chr3 2982396 2985216 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0270 116 405 Trihelix Transcription Factor Family AT1G70460 46.512 4.55e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Mtr3g0270 PK_Tyr_Ser-Thr 8.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0270 - - gmx:100794450 624.78