Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0260 ATGTCAAGCAAGAAAAAACCCAAACGCAAAAACAACAATAGCGACGATGAAGACGACGACGTTTTCTTCTACCGTTTCTGCGCTTCATCCTCAACCCCCAACACCACCACCACCACCACCAACAACAACAACCAAATCCAATCCTCAAAACCAAACAACAAAGCACCATCATCAACAGGAGAAACCTTAGCACCATCAAAATCAACCATATACGTTTCAAATCTAGATTACTCCTTAACTAACTCCGATCTCCACACTCTTTTCTCCACCTTCGGCCGAATAGCGCGTGTGACAGTTTTAAAAGACCGTCACACGCGCTTAAGCCGAGGTGTAGCTTTTATTCAATTTGTTTCCCGTCACGACGCCCAAATCGCCGTGACGGAGATGAATAAGAAGATTTTGAATGGTAGGACTTTGAGTGCTTCTATTGCTTCTGATAATGGACGCGCTCCCGAGTTTATAAAGAAGCGGGTTTATAATACTGAGACGGGATTGTGTTTTGAGTGTGGTGGGAGTGGGCATTTGTCTTATGAGTGTCCTAAGAATCAGTTGGGGGCTAGGGCGAGGCCGCAGCCGAAGAAGCCGCGGAGGGGATTTGGTGGGTCTGGATGGAGCAAAGAGGGGGATGAGGAGGAGGAAGAGAATGATAGGATTGGCGCAGAGCGGTTTGAGGAAGATAATTGGGCTTCTGTGGTGGATGATGGAGCTGATGAGAGATTGTTAGGGAGGAATGGGAATGAGGGTGAGGGTTTGGATGATAAGAAGAGGAGGAAGAAGAAAGGGAAGAGAGCTGGGTATTTTAGTGATGAGAGTGATCACGAGGACGATGATTGA 834 0.47 MSSKKKPKRKNNNSDDEDDDVFFYRFCASSSTPNTTTTTTNNNNQIQSSKPNNKAPSSTGETLAPSKSTIYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRHDAQIAVTEMNKKILNGRTLSASIASDNGRAPEFIKKRVYNTETGLCFECGGSGHLSYECPKNQLGARARPQPKKPRRGFGGSGWSKEGDEEEEENDRIGAERFEEDNWASVVDDGADERLLGRNGNEGEGLDDKKRRKKKGKRAGYFSDESDHEDDD* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0260 277 ProSiteProfiles Zinc finger CCHC-type profile. 166 181 IPR001878 GO:0003676|GO:0008270
Mtr3g0260 277 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 275 - -
Mtr3g0260 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 146 IPR000504 GO:0003723
Mtr3g0260 277 MobiDBLite consensus disorder prediction 220 255 - -
Mtr3g0260 277 Pfam Zinc knuckle 165 181 IPR001878 GO:0003676|GO:0008270
Mtr3g0260 277 MobiDBLite consensus disorder prediction 185 277 - -
Mtr3g0260 277 SUPERFAMILY Retrovirus zinc finger-like domains 157 182 IPR036875 GO:0003676|GO:0008270
Mtr3g0260 277 Gene3D - 29 157 IPR012677 -
Mtr3g0260 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 139 IPR000504 GO:0003723
Mtr3g0260 277 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 275 IPR044598 GO:0000398|GO:0005689
Mtr3g0260 277 MobiDBLite consensus disorder prediction 33 63 - -
Mtr3g0260 277 SMART rrm1_1 69 142 IPR000504 GO:0003723
Mtr3g0260 277 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Mtr3g0260 277 CDD RRM_ZCRB1 67 144 IPR034219 -
Mtr3g0260 277 SUPERFAMILY RNA-binding domain, RBD 39 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0260 Mtr-Chr3 2874830 2876125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0260 67 130 Eukaryotic Initiation Factors Gene Family AT3G11400 42.188 1.24e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0260 K13154 - gmx:100814914 306.219