Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0228 ATGAGAAAGACATTGAATTCAAACCATGTGCCCATGGCCAGGAGAGGTCTTGGATCCAAGGGAGCCAAGATACAACTCTTAGCGAACCATTTTCGAGTTGGCCTGAGCAAGAATGACGGCTACTTCTATCACTACAATGTTGCTTTATGTTATCAAGATGGACATGCGGTTGAAGTGAAAGGAGTTGGGAGAAAAGTCATTGACAAGCTTTGTGAAACATATGATGTATTAAGAAACAAGAATTTTGCATATGATGGCGAGAAAAGTTTATTCACTCTTCGTTCTCTACATCATAAAAAGCAGGAATTCATTGTTGTGTTAGAGGAAGTTTCATCAACGAGAGTTGGAAGCAACCCTTCTGAAGCAACCAAGAGAATGAAGCATCAATCTCGGTCCAAAACATTTAAGGTTGAGATTAGTCATGTATCTAAAATTCCGTTACAAGAAATTACAGATGCCTTGAGAGGTCAGGAATCTGAACACTATCAGGAAGCATTTAATTTCCTTGACACAATACTGAGGCAGAATGCAGCAAAACAGGGATGTCTCCGTATTCATAAATCGTACTTTCACGATAATCAAAAGAATATTACAAACCTGGAAGGTGGTATTCAATGTTGTCGTGGCTTCCATTCGAGCTTCAGAGTCACACAAAGAGGTTTATCTCTCAATGTTGATGTGTCAACTACATTACTTGTAAAGCCTGGTCCTGTAGTGGACTTCCTTCTCCAGAATCAGAATGTTCAGAAACCAAACTTGATTGATTGGACCAAGGCAAAAAGAATGTTGAAAAATCTTAGAATCAAGGCTAACAATACACAACGCAAAATCACTGGACTAAGTGAAAAGTCCTGCATGACACAAAATTTTTTATTTAAACATGGAAATGATGCTAATGGTGAAGTGCAGTCAAGTGAAATAACAATTTATGAATACTTCAAACGCCACAAAAAGATTGAACTTTGTTATTCTGTTGATATGCCATGCATCAATGTTGGAAAACCAAAGAGGCCAATTTATTACCCTATGGAGTTATGCACATTAGTCTCATTGCAGCGATACACTAAGCCGTTAGCGCATAAACAAAGGGCTCAACTGATATTGGAATCAAGGACTAGTCCTCGTGAAAGGAAAGAAGCTTTGCAATATTCTTTAAGAAACAGCAGATATGGCGATGAGCCTATGCTTCGCTCTTTAGGGATTACTATCGAACCTTCCTTTACACAAGTTGACGGTCGTGTCTTGCAACCTCCGACACTTATTGTTGGAAGGGGACAGAACTTTTGTCCCCGAAATGGGAGCTGGAATTTCAATGATAAGAAACTAATTGAACCTGTGAAGATTAAGCGTTGGGCAATTGTAAACTTTTCGTCACAGTGTGATACGAAACATTTGTGCAGTATGATTAAAAAATGTTCTGAAATGAAAGGGATGCTCATAGATCCTCCGTTCGACATATTTGAAGAGGATATTCGCCATAGGAATGAGTCGCCATTTGCGAGGGTTGCAAGAATGTATGAAATGGTAAAGGCCAAGCTACCTGGACCCCCTACGCATCCTCTAGCTCAGCTTCTTTTGTGTATTCTTCCGGTTAGCAGGAATTGTAACATTTATGGTCCTTGGAAAAGAAGATGTCTTGTTGATGAAGGGATTGCAACACAATGCATTGCTCCAACAAAAATTAATGATCATTACATTATTAATGTTCTATTGAAAATTAATGCAAAGCTTGGTGGGATGAATTCCTTTTTGTTAACTGAATTTAAGCATTCGATACCACTGTTTTCAAAAATACCTACATTGGTTATTGGAATGGATGTTTCACATGGATCTCAAGGTCAATCAGAAGCACTATCCATTGCTGCGGTTGTGAGCTCAAGATGTTGGCCTCAAATCTCTCGTTACAAAGCTGTAGTCCGCACTCAGTCGTCAAAAGTAGAGATCGTTCAGTCTCTATTCAAGCCTGTTTCTGATACTAAGGATGACGGTATCATCAGTGAGTTGCTTAAAGACTTCCAAACAACTTCAGGAGTAAAGCCTCAACAAATTATAATTTTCAGGGACGGCGTGAGCGAATCACAGTTCAACCAAGTCCTCAACATTGAATTGAATGAAATCATAAAGGCATGTAAGTGTTATGATGAAAGTTGGTGTCCAAAGTTTACTTTGATTGTTGCTCAGAAGAATCATCACACTAGGTTCTTCAAAGCCAATTCTCCTCAAGAAAATGTTTCACCTGGAACTGTTATTGATAACACTATATGTCATCCCAAAGACAATGACTTCTACATGTGTGCACATGCTGGGAGGATTGGCACAAGTCGTCCTACTCATTACCATGTTTTATATGATGAAATTGGGTTCTCAGCAGATAATTTACAAGAATTTGTGCATTCTCTATGTTATGTGCACCAGAGAAGCACAAATGCCATATCAATAGTTGCACCAATATATTATGCTGACCTAGCTGCTGCTCAGATAGCACAATTTATAAAATATGATGAGTCAGAGAATCTTTCCAGCCACAATGAATTCATATCTCAAATACCTACTGAGTTACCACGTCTTCATGAACGAGTTGCAGATTCTATGTTCTTCTGTTAA 2604 0.3871 MRKTLNSNHVPMARRGLGSKGAKIQLLANHFRVGLSKNDGYFYHYNVALCYQDGHAVEVKGVGRKVIDKLCETYDVLRNKNFAYDGEKSLFTLRSLHHKKQEFIVVLEEVSSTRVGSNPSEATKRMKHQSRSKTFKVEISHVSKIPLQEITDALRGQESEHYQEAFNFLDTILRQNAAKQGCLRIHKSYFHDNQKNITNLEGGIQCCRGFHSSFRVTQRGLSLNVDVSTTLLVKPGPVVDFLLQNQNVQKPNLIDWTKAKRMLKNLRIKANNTQRKITGLSEKSCMTQNFLFKHGNDANGEVQSSEITIYEYFKRHKKIELCYSVDMPCINVGKPKRPIYYPMELCTLVSLQRYTKPLAHKQRAQLILESRTSPRERKEALQYSLRNSRYGDEPMLRSLGITIEPSFTQVDGRVLQPPTLIVGRGQNFCPRNGSWNFNDKKLIEPVKIKRWAIVNFSSQCDTKHLCSMIKKCSEMKGMLIDPPFDIFEEDIRHRNESPFARVARMYEMVKAKLPGPPTHPLAQLLLCILPVSRNCNIYGPWKRRCLVDEGIATQCIAPTKINDHYIINVLLKINAKLGGMNSFLLTEFKHSIPLFSKIPTLVIGMDVSHGSQGQSEALSIAAVVSSRCWPQISRYKAVVRTQSSKVEIVQSLFKPVSDTKDDGIISELLKDFQTTSGVKPQQIIIFRDGVSESQFNQVLNIELNEIIKACKCYDESWCPKFTLIVAQKNHHTRFFKANSPQENVSPGTVIDNTICHPKDNDFYMCAHAGRIGTSRPTHYHVLYDEIGFSADNLQEFVHSLCYVHQRSTNAISIVAPIYYADLAAAQIAQFIKYDESENLSSHNEFISQIPTELPRLHERVADSMFFC* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0228 867 Pfam Piwi domain 525 832 IPR003165 GO:0003676
Mtr3g0228 867 Pfam Argonaute linker 1 domain 185 231 IPR014811 -
Mtr3g0228 867 Pfam N-terminal domain of argonaute 23 173 IPR032474 -
Mtr3g0228 867 ProSiteProfiles Piwi domain profile. 524 832 IPR003165 GO:0003676
Mtr3g0228 867 Pfam Mid domain of argonaute 430 472 IPR032473 -
Mtr3g0228 867 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 7 866 - -
Mtr3g0228 867 SUPERFAMILY PAZ domain 230 389 IPR036085 GO:0005515
Mtr3g0228 867 Coils Coil 263 283 - -
Mtr3g0228 867 SMART DUF1785_2 183 235 IPR014811 -
Mtr3g0228 867 SMART Piwi_a_2 524 832 IPR003165 GO:0003676
Mtr3g0228 867 CDD PAZ_argonaute_like 235 349 - -
Mtr3g0228 867 SUPERFAMILY Ribonuclease H-like 523 830 IPR012337 -
Mtr3g0228 867 Pfam Argonaute linker 2 domain 376 420 IPR032472 -
Mtr3g0228 867 Gene3D paz domain 229 354 - -
Mtr3g0228 867 Gene3D - 414 585 - -
Mtr3g0228 867 CDD Piwi_ago-like 394 826 IPR045246 -
Mtr3g0228 867 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 7 866 - -
Mtr3g0228 867 Pfam PAZ domain 239 366 IPR003100 GO:0005515
Mtr3g0228 867 Gene3D - 591 867 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0228 Mtr-Chr3 2533036 2539248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0228 6 867 Eukaryotic Initiation Factors Gene Family AT5G43810 34.323 2.56e-154 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0228 K11593 - pop:7486850 1089.33