Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0203 ATGTCAATAGTACTAAGAAAATTGTTGGAAATAATCTTAAAACGCAATCCAACATCTTCAGATGAACAACAACAACAACAAGTGTTGCCGTTGCCGTATGGTGATATGGGTGAATTAGATCAACTACCAAGTGATATCTTGATACAAATTTTGAGACTTTTGGGTCCCAAAGAAGTTGCAAAACTGAGTGTGATATGCAAGTCTTTGAAATTTTCTGTATCTGATAATCGTTTATGGCTTCACTTCCTTCAGACTCATCAATCTGATCCATCTTGGGATTCTGTGTTTTTTGCTGAAACTAATTTGATCTCTGGTTACCCTCTTCCATCCTTTGGCCAGAGGCCCCAGCTGTCATTCAAACATATTTATGGTCAGAGAGCTCAGGTTCCTGGTGCTATTATCATTGATGGCGGTTCCGGCTATTGCAAATTTGGTTGGAGCAAATATGCTTGTCCGTCGGGGCGATCTGCAACATTTTTGGAATTTGGCAACATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTCGCAACTATTTATAACAGGATGCAGGTGAAACCAAAAAATCAACCAGTTATTGTTTCTATACCAATATGCCATTATGATGATACTGAATCAGCCAGAGCATCGAGACAGCAACTTAAAGAAGCAATTTATGCTTCCCTGTTCGACTTGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCTCTGTATGCTGCAAAACGTACTTCTGGAATAGCTGTTAATATAGGTTTTCAAGTGACATCAATAGTTCCAATTTTTAATGGTAAAGTAATGCGTAAGGTCGGTGTGAAAGTTGTGGGACTGGGAGCACTGAAAGTTACAGGATTTCTTAAGGAGAAGATGCAACAGAACAACCTAAATTTTCAATCATTGTACACTGTTCGCGCTTTGAAAGAGAATCTATGCTATGTTGCTCTTGATTATGAAGCTGAGCTATTGAAAGAAAACACACAAGCATCATTTCAAGCTACAGGAGATGGATTGTTTACACTTTCAAAAGAGCGGTTTCAGACAGCTGAGATTTTATTCAAGCCACATCTTGCTGGAGTGCAAGCCATGGGTTTACACCATGCCATAGCTCGTTGTATGGAGAATTGCCATTCTGCAGGATTACCAGGCGACAACGATTGGTACAAAACTGTAGTTTTATCAGGTGGAACTGCATGTTTGCCAGGTTTGGCAGAAAGATTAGAGAAGGAACTCCATGGCTTACTTCCTCCATACATGTCCAATGGAATTAGAGTCATACCTCCTCCATACGGTGTCGATACTCCATGGTTTGGAGCAAAGATGATTGGCAATTTGAGCACATTTCCTGGATCTTGGTGTGTGGAAAAAAAGAAGTTCCGCCAGAAGCCTAGGCTCGGCCTCATATGGTGA 1416 0.4068 MSIVLRKLLEIILKRNPTSSDEQQQQQVLPLPYGDMGELDQLPSDILIQILRLLGPKEVAKLSVICKSLKFSVSDNRLWLHFLQTHQSDPSWDSVFFAETNLISGYPLPSFGQRPQLSFKHIYGQRAQVPGAIIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPKNQPVIVSIPICHYDDTESARASRQQLKEAIYASLFDLNVPAVCAVNQATLALYAAKRTSGIAVNIGFQVTSIVPIFNGKVMRKVGVKVVGLGALKVTGFLKEKMQQNNLNFQSLYTVRALKENLCYVALDYEAELLKENTQASFQATGDGLFTLSKERFQTAEILFKPHLAGVQAMGLHHAIARCMENCHSAGLPGDNDWYKTVVLSGGTACLPGLAERLEKELHGLLPPYMSNGIRVIPPPYGVDTPWFGAKMIGNLSTFPGSWCVEKKKFRQKPRLGLIW* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0203 471 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Mtr3g0203 471 SMART actin_3 130 461 IPR004000 -
Mtr3g0203 471 SUPERFAMILY F-box domain 34 94 IPR036047 GO:0005515
Mtr3g0203 471 Gene3D Actin; Chain A, domain 4 280 364 - -
Mtr3g0203 471 PANTHER ACTIN 85 468 IPR004000 -
Mtr3g0203 471 SMART fbox_2 42 82 IPR001810 GO:0005515
Mtr3g0203 471 Gene3D - 173 463 - -
Mtr3g0203 471 Gene3D - 30 106 - -
Mtr3g0203 471 Gene3D - 237 436 - -
Mtr3g0203 471 PANTHER MACRONUCLEAR ACTIN 85 468 - -
Mtr3g0203 471 Pfam F-box domain 39 80 IPR001810 GO:0005515
Mtr3g0203 471 Pfam Actin 179 455 IPR004000 -
Mtr3g0203 471 CDD NBD_sugar-kinase_HSP70_actin 133 283 - -
Mtr3g0203 471 SUPERFAMILY Actin-like ATPase domain 246 455 IPR043129 -
Mtr3g0203 471 SUPERFAMILY Actin-like ATPase domain 131 252 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0203 Mtr-Chr3 2327635 2334476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0203 179 467 Cytoskeleton Gene Families AT3G12110 31.313 4.16e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0203 K16616 - gmx:100791973 746.888