Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0196 ATGTCAATTAATCAAAATCAAAATCAAAATCAAAATCCAAATCAAAATCAGTGTGAGAGTGAATCAAAATCAAACACAAACCCTTATCCTCCTCCAACCGCACCTTACTCTGATCTTGTTCGTGATTCTAATCTCTTCCAACAAAAGCTTCAATCTTTTCATGATTCGCTTGGTACCAAATTAAAGATTCCTACTATAGGGGGGAAGCCACTAGATCTGCATCACCTCTTCGTTGAAGTAACATCTCGTGGTGGTATTGAAAAGGTAATTGTAGATCGTAAATGGAAGGAAGTAATAATGAGCTTCAACTTCCGAGATACCATAACAAGCGGATCATTCATGGTGCGCAAGACCTATCTATCGTTGCTTTATCATTTTGAGCAAGCGTATTATTTTTGCAAGCAAGTCCCTCCCTCAACACCTGATGCTTTGAGTGGGAACGTTGCCAATAGCTTCACAACGAATACGGACGGTGCTGCTATCAATGATTCACCTGTCCAGGTTAGTCCAATTAGTCCAGCACAGACACTTGGTTCTTCAGTGCGTGGAACAATTGACATGAAATTTGATGACGGATATATAGTTACGGTAGACCTGGGTTCTGAACAGCTGAAAGGTGTCCTGTATCATGTTTCAAGTAATGCATCTAAGGGTTCTTCTATTGAAGGCAAGAAGGATCAATTAGCAGGAAAATTGGGTTTATGA 705 0.4 MSINQNQNQNQNPNQNQCESESKSNTNPYPPPTAPYSDLVRDSNLFQQKLQSFHDSLGTKLKIPTIGGKPLDLHHLFVEVTSRGGIEKVIVDRKWKEVIMSFNFRDTITSGSFMVRKTYLSLLYHFEQAYYFCKQVPPSTPDALSGNVANSFTTNTDGAAINDSPVQVSPISPAQTLGSSVRGTIDMKFDDGYIVTVDLGSEQLKGVLYHVSSNASKGSSIEGKKDQLAGKLGL* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0196 234 SMART bright_3 41 132 IPR001606 GO:0003677
Mtr3g0196 234 Gene3D - 36 142 IPR036431 GO:0003677
Mtr3g0196 234 ProSiteProfiles ARID domain profile. 40 131 IPR001606 GO:0003677
Mtr3g0196 234 Pfam ARID/BRIGHT DNA binding domain 44 127 IPR001606 GO:0003677
Mtr3g0196 234 MobiDBLite consensus disorder prediction 1 27 - -
Mtr3g0196 234 MobiDBLite consensus disorder prediction 1 38 - -
Mtr3g0196 234 SUPERFAMILY ARID-like 40 139 IPR036431 GO:0003677
Mtr3g0196 234 SMART ARID_2 37 127 - -
Mtr3g0196 234 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 222 - -
Mtr3g0196 234 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 9 222 - -
Mtr3g0196 234 Coils Coil 234 234 - -
Mtr3g0196 234 CDD ARID_HMGB9-like 42 127 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0196 Mtr-Chr3 2214360 2220276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0196 34 217 ARID Transcription Factor Family AT3G13350 49.462 1.76e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr3g0196 ARID 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0196 - - mtr:MTR_3g009890 423.32