Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0181 ATGGCATCCCAATCCTCTAGCGTCTCAGCCACTTCACAAGATCAAGGTGATTCTTCCAACTCAAAAAAAATTATGATCGAGAAGGAGATTGAACATGATCAACCATCAAATTCCAATCCCAACAAGTTTTTTGATTTCGTGAAGCTATCGAAAGACGATTCGGTTCTTAGGTCAGAGGTGCAAGAGCACGATTTTTTTGGCACTTTTCAAGTCGGTTCCTCGTCTCGTTTTCCTAGTAACAACAATGAAAGGAAAAACGAGAACAACGATGAAGAGAAGAATTCAGATTCAAAGTCTTTTTCATGTTGTTTTTGCAAGAGAAAATTTTCTACTTCGCAAGCCTTAGGAGGACACCAGAATGCCCATAAGGCTGAACGTACGTTAGAAAAACAACGTAAACAAAGGTATGAAAGTGGTGCTTTTGGTTTAGGGCAACCTCACTTTAACCCTTATTTTAGTTATCCAAGTACTCTTTTTACACGCCCTTATTTTAGCGCAATTGGGACTAGAATGGAATCCATGATTCAAAAACCACTTTTTATTAACCCTAGAATTACTCCACATAGTTTTAGACCTTTTGGGTATGGTAATGGTGGTTTGGGTTTGCAAGAGATATTAAACCCTTCTCTTGTTAGTTTGAGAAATATGGAGGGCAGTAATAGTAATTCTAGGGTTGGAATTCTAGGTACCGGGGATGCAACTACTTTAAGGATTGAAGATGGTGAAAATAATAAAATTGGTACTAATCTAAAGTTTGAAGATTCTTCTACAAATGTTACAACAAGTTCAAACTCAAACCTAGAAAAGAAAATTATTATGGCTCCCACTTCAACCAATGATGATATTCATGATCAATCAAAATCCAACAATGAAGAAGAACCATCAGATAAATCTCATGGCCTTGATTTATCACTGAAGCTGTAA 924 0.368 MASQSSSVSATSQDQGDSSNSKKIMIEKEIEHDQPSNSNPNKFFDFVKLSKDDSVLRSEVQEHDFFGTFQVGSSSRFPSNNNERKNENNDEEKNSDSKSFSCCFCKRKFSTSQALGGHQNAHKAERTLEKQRKQRYESGAFGLGQPHFNPYFSYPSTLFTRPYFSAIGTRMESMIQKPLFINPRITPHSFRPFGYGNGGLGLQEILNPSLVSLRNMEGSNSNSRVGILGTGDATTLRIEDGENNKIGTNLKFEDSSTNVTTSSNSNLEKKIIMAPTSTNDDIHDQSKSNNEEEPSDKSHGLDLSLKL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0181 307 MobiDBLite consensus disorder prediction 254 283 - -
Mtr3g0181 307 MobiDBLite consensus disorder prediction 1 20 - -
Mtr3g0181 307 MobiDBLite consensus disorder prediction 284 307 - -
Mtr3g0181 307 MobiDBLite consensus disorder prediction 21 35 - -
Mtr3g0181 307 MobiDBLite consensus disorder prediction 1 42 - -
Mtr3g0181 307 SUPERFAMILY beta-beta-alpha zinc fingers 96 128 IPR036236 -
Mtr3g0181 307 MobiDBLite consensus disorder prediction 254 307 - -
Mtr3g0181 307 PANTHER ZINC FINGER PROTEIN KNUCKLES 72 307 - -
Mtr3g0181 307 PANTHER ZINC FINGER PROTEIN JAGGED 72 307 IPR045320 GO:0003700
Mtr3g0181 307 Gene3D Classic Zinc Finger 77 141 - -
Mtr3g0181 307 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Mtr3g0181 307 MobiDBLite consensus disorder prediction 83 97 - -
Mtr3g0181 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Mtr3g0181 307 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0181 Mtr-Chr3 2037202 2038125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0181 92 191 C2H2 Transcription Factor Family AT1G80730 40.541 5.19e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0181 - - mtr:MTR_3g011970 341.273