Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0178 ATGGCTTCTTCATCGAGCAGCGGGTTAACATTCAAGCTCCACCCACTTGTGATCGTAAACATCTCCGATCACTACACTAGGGTTAAATCTCAGATGAACCCTACACTCGCTCCTCACAACAACGCCACCAACAACGGCGGTGACGGTGTAGTTTCTTCTCTTCCACCGCCACGTGTCTTTGGTTGTGTCATCGGTGTTCAGAAAGGTCGCACTGTTGAAATCTTCAATAGCTTTGAACTTCTCTATGATCCTTCTACTCATTCGCTTGATCGTCCTTTCCTTGAGAAGAAGCAAGAACTCTATAAGAAGGTTTTTCCACACTTCTACATATTGGGATGGTATTCAACTGGAAGCGATGCAGAGGAATCTGATATGCATATTCATAAAGCTTTGATGGATATCAATGAAAGTCCGGTTTATGTGCTTCTGAACCCTGCAATCAATCACTCACAGAAGGATCTCCCCGTCAGTATATTTGAAAGTGAACTGCATGTCATAGATGGGATTCCACAGCTTATCTTTGTCCGCTCAAGCTATACTATTGAGACTGTTGAAGCAGAACGGATCTCAGTTGATCATGTTGCTCATCTAAAGCCATCTGATGGTGGTTCAGCAGCTACACAATTGGCTGCTAACCTTACTGGTATACACAGCGCCATCAAAATGCTTCATAGCAGAATAAAGGTGCTACATCACTATCTTCTTGCTATGGAAAAAGGTGACGTTCCTTGTGAGAATTCACTATTAAGGCAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCTGGGAAATTTCAAGATGATTTCTTGATGGAATACAATGACACCTTATTGATCAGTTACCTTGCCATGCTGACCAACTGCTCAAGTGCAATGAATGATTTGGTGGACAAATTCTCTACTGCTTATGATAGACATACCAGAAGGGGTGGACGAACTGCTTTCAGTGAATGTTGCCTTGTGCTCGTTTCTAGATGTCTTGTTTTGGACAGCTTCGACGCACTTTTCCAACTCTGTAGGCACAGATTTTTGTCTTCTTCTCTTTGCTGCTTAGGCATTGGTTATTAA 1074 0.4274 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPHNNATNNGGDGVVSSLPPPRVFGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPAINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAANLTGIHSAIKMLHSRIKVLHHYLLAMEKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHTRRGGRTAFSECCLVLVSRCLVLDSFDALFQLCRHRFLSSSLCCLGIGY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0178 357 Pfam Maintenance of mitochondrial structure and function 185 299 IPR024969 -
Mtr3g0178 357 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 317 - -
Mtr3g0178 357 ProSiteProfiles MPN domain profile. 11 165 IPR037518 -
Mtr3g0178 357 Gene3D Cytidine Deaminase, domain 2 1 199 - -
Mtr3g0178 357 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 317 - -
Mtr3g0178 357 SMART pad1_6 10 164 IPR000555 GO:0005515|GO:0008233|GO:0008237
Mtr3g0178 357 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 137 IPR000555 GO:0005515|GO:0008233|GO:0008237
Mtr3g0178 357 CDD MPN_CSN6 9 314 IPR033859 GO:0000338|GO:0008180
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0178 2 269 Eukaryotic Initiation Factors Gene Family AT2G39990 22.344 4.32e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0178 K12179 - gmx:100797079 588.571