Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0162 ATGGCAATCAAACACCAAGGAAACAATTCCCTCTTGAAACATTGTTGTTCATCAAGGCGTGTAATAACCTTGATACAAAAGGTAACTGCAGAAGTTATTGGTACATATTTTCTAGTGTTTGCTGGGTGTGGTGCTGTAGCAGTAAACAAGATCCATGGCTCTATCACTTTTCCAGGGATTTGCATCACTTGGGGGTTGATTGTAACAGTCATGTGTTACTCAGTTGGTCATATCTCTGGAGGCCTCTTCAACCCTGCTGTTACCATCACCTGGGCTATTTTTCGCCGAATCACGATTAAAGAGGCTCCTTTGTACATTCTTGCTCAATTACTTGGTTCTACACTTGCAAGTGTAACGTTATCTTTAATGTTTGACATCACACCCGAATCATATTTCGGAACTGTACCGGTCGGATCAAACTGTCAATCTTTAGTGTTAGAAATCATTATCAGTTTTCTCTTAATGTTTGTCATTTCAGCTGTTACTACAGATGATAGAGCGGTCGATGACTCGGCAAGTATTGCGGTTGGAATGACATTAACATTGAATCTTTTTATTGCTGGGCCTGTGTCAGGTGCATCTATGAACCCAGCAAGAAGTATTGGTCCTGCAATTGTGATACATATTTACAAAGGATTGTGGATATATATAGTTGGTCCAATTATTGGAGCCATAGCTGGAGCACTTGCCTATAACTTTCTAAGATCAGCATACAAACCAACTTCAGAGACAATAGCAGACAAGCCAACTTCAGAATTAACAACAGACAAGCCAACTTCAGAGAACATTGTGTAG 795 0.4013 MAIKHQGNNSLLKHCCSSRRVITLIQKVTAEVIGTYFLVFAGCGAVAVNKIHGSITFPGICITWGLIVTVMCYSVGHISGGLFNPAVTITWAIFRRITIKEAPLYILAQLLGSTLASVTLSLMFDITPESYFGTVPVGSNCQSLVLEIIISFLLMFVISAVTTDDRAVDDSASIAVGMTLTLNLFIAGPVSGASMNPARSIGPAIVIHIYKGLWIYIVGPIIGAIAGALAYNFLRSAYKPTSETIADKPTSELTTDKPTSENIV* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0162 264 TIGRFAM MIP: MIP family channel proteins 30 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr3g0162 264 CDD MIP 26 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr3g0162 264 PANTHER AQUAPORIN NIP2-1 13 246 IPR034294 -
Mtr3g0162 264 Gene3D Glycerol uptake facilitator protein. 2 248 IPR023271 -
Mtr3g0162 264 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr3g0162 264 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr3g0162 264 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr3g0162 264 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr3g0162 264 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr3g0162 264 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr3g0162 264 Pfam Major intrinsic protein 22 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr3g0162 264 SUPERFAMILY Aquaporin-like 20 241 IPR023271 -
Mtr3g0162 264 PANTHER AQUAPORIN NIP4-1-RELATED 13 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0162 Mtr-Chr3 1753274 1754395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0162 16 254 Major Intrinsic Protein MIP AT5G37820 62.083 4.88e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0162 K09874 - gmx:100791338 340.117