Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0142 ATGGAGAACAATAGAAGAGAATGTCACATTTGTAACAAGTCATTTTCTAATGGAAAAGCATTGGGAGGCCACATGAAAACTCACTTGGCTAAATTACCAATTCCTCTAAAATCTCCAATCAACAACCAAGCACCTGAACACTCAGTTGAGTCCACCAAACATCAAACTCACTCTATTTCTACATCCTCCTCATCAATTTCCAATCCAAAAAACCCTATACATAATCTCCGAGCTTTGAAGAGGAACTTTTATCATACCCTTTTAAACTTCGGTAAGAATAGTGTGTTTGATTCTTTTCCAAAAAACCCAACTGGAAAAAGATCGAAACGTGGTCGTAGACAATTTAATTTGGCTGAAGATAATACAATATTCAATGTGGCTAAAAAGAAAGAAGAAAATACAAGATTTAACGTGGCTGAAGAAAATGAAGAGGATACACGATTTAATACACAAATTAAATTAGTGTATAGTGATTTGGATACAGAAGCTGCTGAAACATTGGCTATTATTTGTGTGAACGAATGGAAACAAGTTGAGGAGAAATACTATATTGAAAAGAAAAAGGTTAGTGAAAATGGCAACATCATGTTTGAGTGCGATATTTGTCATGAAGTTTTTCAATATTGCAAAGATCTTGTTAGACATGAAGCAATCCATAAGAAAAATAACAATCTATCTGAAGAAATTGGTATAAGTGGAAAGGAATATGATGTTGTAAATGAAGAAGTTCACAAGTGCACATATTGCTTGAAATTTTTTGAATTTGATCATGTACTTGAGGAACACAAAACGGTACACTTATCCAATTTTTCTGATTCTAACCCATAG 828 0.3333 MENNRRECHICNKSFSNGKALGGHMKTHLAKLPIPLKSPINNQAPEHSVESTKHQTHSISTSSSSISNPKNPIHNLRALKRNFYHTLLNFGKNSVFDSFPKNPTGKRSKRGRRQFNLAEDNTIFNVAKKKEENTRFNVAEENEEDTRFNTQIKLVYSDLDTEAAETLAIICVNEWKQVEEKYYIEKKKVSENGNIMFECDICHEVFQYCKDLVRHEAIHKKNNNLSEEIGISGKEYDVVNEEVHKCTYCLKFFEFDHVLEEHKTVHLSNFSDSNP* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0142 275 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Mtr3g0142 275 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 274 - -
Mtr3g0142 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Mtr3g0142 275 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 274 IPR044303 GO:0006355
Mtr3g0142 275 SUPERFAMILY beta-beta-alpha zinc fingers 7 219 IPR036236 -
Mtr3g0142 275 MobiDBLite consensus disorder prediction 36 72 - -
Mtr3g0142 275 Pfam C2H2-type zinc finger 197 221 - -
Mtr3g0142 275 Pfam C2H2-type zinc finger 6 30 - -
Mtr3g0142 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Mtr3g0142 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 271 IPR013087 -
Mtr3g0142 275 Gene3D Classic Zinc Finger 191 273 - -
Mtr3g0142 275 SMART c2h2final6 6 28 IPR013087 -
Mtr3g0142 275 SMART c2h2final6 244 266 IPR013087 -
Mtr3g0142 275 SMART c2h2final6 197 219 IPR013087 -
Mtr3g0142 275 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Mtr3g0142 275 MobiDBLite consensus disorder prediction 41 72 - -
Mtr3g0142 275 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0142 Mtr-Chr3 1541044 1541871 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0142 5 268 C2H2 Transcription Factor Family AT1G02030 25.279 6.54e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g0142 zf-C2H2_6 0.0017 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0142 - - mtr:MTR_3g008310 311.227