Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0140 ATGGAGAACAATGGTAGAGTGTGTCTCATTTGTAACAGGTCATTTTCTAATGGAAAAGCTTTGGGGGGACATATGAAATCCCACTATGCCAAACTACCAATCCATCCAAAACTCCCGATCCATCCAAAACCCCCAATCAACAACCAAGTACTTGAATACTCAGCTGACTTGGCCAAACATCCAACTCACTCTATCTCTACATCTTCACCATCAATTGTTAGTCCAAGAAATAACTCAACATACAATCCTCAAGCTTTGAAAGTGAAATTCAAATGTACCCCGTCAAACTTTGGTAGGAATAGTGTGTTTCAGTCTTGTCCAACAAACCCAACTGGAAAAAGATCAAAACGCAAACCAAGACAGTTTCATATGGCTGAAGAAAGAGAAGAGAACACACAATTTAACATGGCTGAAGAAAAAGAAGATAATACACAATTACAATCGGTGTATAGTGATTTGGATATAGAAGCTGCTGAAACACTAGGTGTTATTCTTAAGAAAGAATGGAACCAAATTGAGGACAAATACTACACTGAGAAGAAAAAAGCAAGTGAAAATGGAAACACCGTATTTGAGTGTGATATTTGTCATGAAGTGTTTCAATCTGGCAAAGATCTTTTCGGACATGAAGAGATCCATAGGAAAACTACCAATCTAGCAGGAGAGATTGGTAGAAGTGGAAACATATATGATGTCGTAAATGAAAAAGTGCATAAGTGCGAATATTGCTTTGACATCTTTGAATCTGGTCACGTATTGGAGGAACACACGAAGGTACACCTATACAATTATTATGATTCTGACCCATAG 810 0.3765 MENNGRVCLICNRSFSNGKALGGHMKSHYAKLPIHPKLPIHPKPPINNQVLEYSADLAKHPTHSISTSSPSIVSPRNNSTYNPQALKVKFKCTPSNFGRNSVFQSCPTNPTGKRSKRKPRQFHMAEEREENTQFNMAEEKEDNTQLQSVYSDLDIEAAETLGVILKKEWNQIEDKYYTEKKKASENGNTVFECDICHEVFQSGKDLFGHEEIHRKTTNLAGEIGRSGNIYDVVNEKVHKCEYCFDIFESGHVLEEHTKVHLYNYYDSDP* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0140 269 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Mtr3g0140 269 MobiDBLite consensus disorder prediction 61 80 - -
Mtr3g0140 269 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Mtr3g0140 269 Pfam C2H2-type zinc finger 190 215 - -
Mtr3g0140 269 Pfam C2H2-type zinc finger 7 30 - -
Mtr3g0140 269 Gene3D Classic Zinc Finger 165 262 - -
Mtr3g0140 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 218 IPR013087 -
Mtr3g0140 269 SUPERFAMILY beta-beta-alpha zinc fingers 7 213 IPR036236 -
Mtr3g0140 269 SMART c2h2final6 191 213 IPR013087 -
Mtr3g0140 269 SMART c2h2final6 238 260 IPR013087 -
Mtr3g0140 269 SMART c2h2final6 6 28 IPR013087 -
Mtr3g0140 269 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Mtr3g0140 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Mtr3g0140 269 MobiDBLite consensus disorder prediction 103 122 - -
Mtr3g0140 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 260 IPR013087 -
Mtr3g0140 269 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 268 IPR044303 GO:0006355
Mtr3g0140 269 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0140 Mtr-Chr3 1522859 1523668 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0140 8 260 C2H2 Transcription Factor Family AT1G02030 24.710 1.93e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g0140 zf-C2H2_6 1.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0140 - - mtr:MTR_3g008310 467.233