Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0110 ATGGCTCTGAAGTTTATAGCAATTTCGGCGGTTTCTACGGTGTTAAGTTTTGTAGGTCTTCAGTTTTGCACAGATTTGTCATTAGAGAAACTTAAATCAGATGGACTAATTGGCTGGAATTCAATTCACTTGGACAATGTCGACCATGACATTGAGTTACCTTTGGGTTTGTATACCACCATAGTGTTACTGACGAATTGTATGATCAATGTATTTGTCCTTCTTAATCTTTGTCTCAAGGCTATGTTTTTCTCAGAGTTGTACCCTTCTGAAACTCGTAAACTGATTGAACGTCTCGTTAATTATGTCATTTACAAGGGAACATTTCTTCCACTGGTTGTGCTACCAACACTTTATCAAGCCGGTCTTTGGTCAACTTGGTTGGCCGTACTTTGTTCTTTAAAGATGTTTCAAGCTTTGGCTAGAGATCGATTGGAGCGGCTGAATGCATCTCCATCTGCCACACCCTGGACATATCTTCGTGTATATTCAGCATTGTTATTCATTTTCTTGGTTGATGTTCTCTGGATTAGGCTTTGTCTTGAAATATATAGCACTCATGGGTCCTCTATGTTCCTGCTACTTTTCTTTGAGCCTTTGAGTATTGCTTTCGAGACACTGCAGGCCATTTTGGTGCATGGATTTCAGTTACTTGACATATGGATTCATCATTCGGCTTGCAGCGGCAGTGATTTCCGAACACATAAACTGCTTGATGCATTAACCGCAGGTTCTTTATTGGAATGGAAGGGAATACTTATCCGGAACTTGGGATTTTTCCTAGATATGGCCACATTTTTTATGGCACTTGGTCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCGTTACTTAGTGCAATGATAAACCGCATAAAAGGCTTTATTAGACTAAGGATAGCTCTAGGAGCACTTCATGCAGCTCTTCCCGATGCAACCACTGAAGAGCTAAGAGGATATGAAGATGAATGCGCTATTTGTAGAGAACCCATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTCTTCCATCTTGCGTGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACATGCCGAAAGCCACTTTTTGCAGGCCGGCCTGAAAATGAAACAAACTCTAGTACAGGGGTAATATCTAGTGATGAGCAACTTGCACGGCAAATGAGTGCCGGATTCGATCGTCAAAACTCGGCTAGACATAACATGCCTGCAGGATTGTTTCCAAATCCGACACTCAACAATGCCGAAGGTGTTCCTTGGAGGAGCGCAGGACTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAGGGTGTTGATGGAGCTGGTCCATCTACTGCTATCAGAACAGTAGGTCTCGGAAGAGTTCAAATGATGATGAGACATCTTGCATCTGTCGGAGAAACCTATGCTCAGACAACCTTTGATGATGCTTCTTGGAACCTTTGGCCTATTAATCCTTCTCAGACTTCCGCGAGTGGTCCAAGTCAGCCGACCGCTCCTTCCCCTGGTGTAAGACTGCCAGGAGGAAATGGTGGTTTACATATAAGGACCGCTTCACGGTCTGCAAATGATAATTTAGCAAATGTGCTTGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCGGACGACATAATATTCCAGGACTTGCAGCGGACAAATTCTGTTACAGTTACTGTGAATAATCTTCTCCAAATGTGA 1770 0.4299 MALKFIAISAVSTVLSFVGLQFCTDLSLEKLKSDGLIGWNSIHLDNVDHDIELPLGLYTTIVLLTNCMINVFVLLNLCLKAMFFSELYPSETRKLIERLVNYVIYKGTFLPLVVLPTLYQAGLWSTWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFIFLVDVLWIRLCLEIYSTHGSSMFLLLFFEPLSIAFETLQAILVHGFQLLDIWIHHSACSGSDFRTHKLLDALTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAMINRIKGFIRLRIALGALHAALPDATTEELRGYEDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGRPENETNSSTGVISSDEQLARQMSAGFDRQNSARHNMPAGLFPNPTLNNAEGVPWRSAGLDSGWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTTFDDASWNLWPINPSQTSASGPSQPTAPSPGVRLPGGNGGLHIRTASRSANDNLANVLAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0110 589 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Mtr3g0110 589 SUPERFAMILY RING/U-box 326 386 - -
Mtr3g0110 589 MobiDBLite consensus disorder prediction 506 537 - -
Mtr3g0110 589 MobiDBLite consensus disorder prediction 506 520 - -
Mtr3g0110 589 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 589 - -
Mtr3g0110 589 Pfam Ring finger domain 336 380 IPR001841 -
Mtr3g0110 589 ProSiteProfiles CUE domain profile. 549 589 IPR003892 GO:0043130
Mtr3g0110 589 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 589 - -
Mtr3g0110 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 388 IPR013083 -
Mtr3g0110 589 Pfam CUE domain 553 589 IPR003892 GO:0043130
Mtr3g0110 589 Gene3D - 548 588 - -
Mtr3g0110 589 SMART ring_2 338 379 IPR001841 -
Mtr3g0110 589 CDD CUE_RIN3_plant 550 587 IPR035667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0110 Mtr-Chr3 1217116 1224059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0110 57 435 C3H Transcription Factor Family AT3G16090 26.914 8.20e-30 121